Browse Element(s) Details


Os.26479.3.S1_x_at

Description gb:NM_189781.1
DB_XREF= gi:34906645
GEN=P0431G06.19
TID=Os.26479.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADPH:quinone oxidoreductase (P0431G06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431G06.19 (P0431G06.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7243011/11NADPH-dependent FMN reductase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72460Os.24906.1.S1_at10/111+42344922..42346355NADPH:quinone oxidoreductase, putative, expressed
LOC_Os01g72470Os.51382.1.S1_at11/111+42347709..42348313expressed protein
LOC_Os01g72480Os.10877.1.S1_at11/111+42352542..42354833Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008752molecular_functionFMN reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26479.3.S1_x_at--54--2711Chr01:42333275..42333299 (25 bp)
AAGCTTTTGCACTAAGCAGCGCGCG
LOC_Os01g72430
Os.26479.3.S1_x_at--288--4571Chr01:42333257..42333281 (25 bp)
GCGCGCGTGCATGCATCCAAATAAT
LOC_Os01g72430
Os.26479.3.S1_x_at--990--10791Chr01:42332634..42332658 (25 bp)
TTGTCAACCTCTCTTGGACTTGCAG
LOC_Os01g72430
Os.26479.3.S1_x_at--454--8131Chr01:42332619..42332643 (25 bp)
GGACTTGCAGAAACACGCCGTGGTG
LOC_Os01g72430
Os.26479.3.S1_x_at--508--7531Chr01:42332585..42332609 (25 bp)
GTGGCAGGCACGTACTACAGATTAC
LOC_Os01g72430
Os.26479.3.S1_x_at--453--9831Chr01:42332570..42332594 (25 bp)
TACAGATTACCAGCCAACTTTGCCG
LOC_Os01g72430
Os.26479.3.S1_x_at--94--711Chr01:42332544..42332568 (25 bp)
ATGATGTCCGGAGGTAGTGCCACTT
LOC_Os01g72430
Os.26479.3.S1_x_at--213--10291Chr01:42332482..42332506 (25 bp)
TTTGCGTCGACGTATCATGATCCCT
LOC_Os01g72430
Os.26479.3.S1_x_at--862--8331Chr01:42332398..42332422 (25 bp)
GGCTGACTCATCTATTGGACATTTG
LOC_Os01g72430
Os.26479.3.S1_x_at--117--10411Chr01:42331514..42331538 (25 bp)
TTTTGTTTTGCAAGACCCGCTCGAT
LOC_Os01g72430
Os.26479.3.S1_x_at--888--9431Chr01:42331487..42331511 (25 bp)
TCGGTGGTTGGTGCTCATCGATCAA
LOC_Os01g72430
Target Sequence 
AAGCTTTTGCACTAAGCAGCGCGCGTGCATGCATCCAAATAATGCATCAGTTTGCTTTGTCAACCTCTCTTGGACTTGCA
GAAACACGCCGTGGTGTGGACAAGCGTGGCAGGCACGTACTACAGATTACCAGCCAACTTTGCCGCATGATGTCCGGAGG
TAGTGCCACTTGTTTTTTGTTGCATGGACAGCAAAAGGTGTTTGCAACTTTGCGTCGACGTATCATGATCCCTGCCACTA
TCTCCACTTCACAAAAATCACAAAATGGGAGACCACACACACCATGGAAAATGGCTGACTCATCTATTGGACATTTGGGC
CTACAGGAAAAAGAAACTGACGATGATGTTCTGAAGATATGTATTATCTTTTGTTTTGCAAGACCCGCTCGATCGTCGGT
GGTTGGTGCTCATCGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26479.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis