Browse Element(s) Details


Os.19497.1.S1_at

Description gb:AK068882.1
DB_XREF= gi:32978907
TID=Os.19497.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.13 (P0431G06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169K14, full insert sequence.
FL= gb:AK068882.1 gb:AK064981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7238011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19497.1.S1_at--384--7371Chr01:42311362..42311386 (25 bp)
GTGACTTGATTTCTTAGGCCTTTTA
LOC_Os01g72380
Os.19497.1.S1_at--509--9691Chr01:42311384..42311408 (25 bp)
TTACCAAGCCCCTCGAAGAGTTTCT
LOC_Os01g72380
Os.19497.1.S1_at--290--1131Chr01:42311456..42311480 (25 bp)
AGTGCAGTGATCTACTTTGCGTCTC
LOC_Os01g72380
Os.19497.1.S1_at--1161--8772Chr01:42311555..42311579 (25 bp)
TGCGTTACCCAGACCGAGCGAAGTT
LOC_Os01g72380
Os.19497.1.S1_at--1053--5331Chr01:42311574..42311598 (25 bp)
GAAGTTCTCCGCATCCTGCATGGGA
LOC_Os01g72380
Os.19497.1.S1_at--602--8071Chr01:42311596..42311620 (25 bp)
GGAGCGAGTCGCCATCTTTGATTGC
LOC_Os01g72380
Os.19497.1.S1_at--846--4151Chr01:42311624..42311648 (25 bp)
CGCGCGCGACACATTAGCAGATTTC
LOC_Os01g72380
Os.19497.1.S1_at--8--1971Chr01:42311684..42311708 (25 bp)
ACTGTGACCGGCCTTAGATTAATCA
LOC_Os01g72380
Os.19497.1.S1_at--3--10211Chr01:42311771..42311795 (25 bp)
TATTTTTTAGTGATCAAGCCCCTTC
LOC_Os01g72380
Os.19497.1.S1_at--318--2671Chr01:42311786..42311810 (25 bp)
AAGCCCCTTCCTATAGTATACAACT
LOC_Os01g72380
Os.19497.1.S1_at--318--3031Chr01:42311866..42311890 (25 bp)
AATGCCCTCATTCAAATGTTGCCTA
LOC_Os01g72380
Target Sequence 
GTGACTTGATTTCTTAGGCCTTTTACCAAGCCCCTCGAAGAGTTTCTCTAGCGGCTGGGCAACTCAGAAATTGGCCCAAG
CAACCTCATCCCACAGTGCAGTGATCTACTTTGCGTCTCCACGCGCGGCGCGAGGTTACGGGGCGTCGGAGGCATGCCCT
CCACAGCGCACGGAATCAGGGTGATTGGCGCCGTGCGTTACCCAGACCGAGCGAAGTTCTCCGCATCCTGCATGGGAGCG
AGTCGCCATCTTTGATTGCGACCGCGCGCGACACATTAGCAGATTTCGGACTGGCAAAGGAAGTAACACGCCACGTCCTT
GCACTGTGACCGGCCTTAGATTAATCACTGATTCTTGCGGGGATAAATCCATGTCAATCTGTAAAGTTACACACATACTT
AATTCCTACTATTTTTTAGTGATCAAGCCCCTTCCTATAGTATACAACTCTCAGGCTGAAAGCCATTTTATAGTGAATTT
CTTTGTAAGTGATTAGGCAAATCAAATGCCCTCATTCAAATGTTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis