Browse Element(s) Details


OsAffx.9670.1.S1_at

Description tigr:9629.m07161
TID=OsAffx.9670.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7239011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72420Os.5540.2.S1_at11/111+42326677..42329626C2 domain containing protein, expressed
LOC_Os01g72430Os.26479.1.A1_a_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.2.S1_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_x_at11/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72430Os.26479.3.S1_at10/111+42330820..42336634NADPH-dependent FMN reductase family protein, putative, expressed
LOC_Os01g72440OsAffx.24014.1.S1_at11/111+42338035..42338356hypothetical protein
LOC_Os01g72450Os.42819.1.S1_x_at11/111+42339586..42340430DNA-binding protein, putative, expressed
LOC_Os01g72450Os.42819.1.S1_at11/111+42339586..42340430DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9670.1.S1_at--176--5511Chr01:42313460..42313484 (25 bp)
GAAAATTTGCGTCATCTAACTTTAT
LOC_Os01g72390
OsAffx.9670.1.S1_at--332--7891Chr01:42313357..42313381 (25 bp)
GGTTACAGTCTCTCAAAATATGGCG
LOC_Os01g72390
OsAffx.9670.1.S1_at--563--3711Chr01:42313322..42313346 (25 bp)
CTAGTTTTCCCTCGATGGATTGCAA
LOC_Os01g72390
OsAffx.9670.1.S1_at--662--5251Chr01:42313281..42313305 (25 bp)
GAATCTAGTCAAACTCTTTCTGGTA
LOC_Os01g72390
OsAffx.9670.1.S1_at--49--7411Chr01:42313252..42313276 (25 bp)
GTGATCAGTGCCAAAAGCTTCCCGC
LOC_Os01g72390
OsAffx.9670.1.S1_at--975--1531Chr01:42313237..42313261 (25 bp)
AGCTTCCCGCAATATGGTGCCTTAA
LOC_Os01g72390
OsAffx.9670.1.S1_at--446--2411Chr01:42313213..42313237 (25 bp)
AAACACTTGAGCTTCTATGCCTAGA
LOC_Os01g72390
OsAffx.9670.1.S1_at--605--8191Chr01:42313140..42313164 (25 bp)
GGAAGAATGCTACGACATCTCACAA
LOC_Os01g72390
OsAffx.9670.1.S1_at--189--2091Chr01:42313126..42313150 (25 bp)
ACATCTCACAAGCTTTCCCAAAGTT
LOC_Os01g72390
OsAffx.9670.1.S1_at--308--5591Chr01:42313040..42313064 (25 bp)
GAAATTATTACTCTGCCTCAGCTAG
LOC_Os01g72390
OsAffx.9670.1.S1_at--857--1991Chr01:42312968..42312992 (25 bp)
ACTCCGGTGCTCAAGCATTTCATGG
LOC_Os01g72390
Target Sequence 
GAAAATTTGCGTCATCTAACTTTATGTTGGGGCAAGTTCAGGGATGGAAGTATGCTGGCTGAAAATGCCAATGAAGTATT
GGAAGCTCTTCAACCTCCTAAGAGGTTACAGTCTCTCAAAATATGGCGATACACGGGCCTAGTTTTCCCTCGATGGATTG
CAAAAACTTCGTCACTACAGAATCTAGTCAAACTCTTTCTGGTAAATTGTGATCAGTGCCAAAAGCTTCCCGCAATATGG
TGCCTTAAAACACTTGAGCTTCTATGCCTAGATCAGATGAAATGCATTGAATACATATGCAACTATGATACAGTTGATGC
GGAAGAATGCTACGACATCTCACAAGCTTTCCCAAAGTTGAGGGAGATGACGTTACTAAACATGCAAAGTTTGAAGGGAT
GGCAAGAAGTTGGAAGATCTGAAATTATTACTCTGCCTCAGCTAGAAGAGATGACAGTGATTAACTGTCCAATGTTCAAG
ATGATGCCGGCCACTCCGGTGCTCAAGCATTTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis