Browse Element(s) Details


Os.12498.2.S1_at

Description gb:AK104991.2
DB_XREF= gi:42821606
TID=Os.12498.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431G06.12 (P0431G06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E02, full insert sequence.
FL= gb:AK104991.2 gb:AK069958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7236011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein
LOC_Os01g72380Os.19497.1.S1_at11/111+42308965..42311893expressed protein
LOC_Os01g72390OsAffx.9670.1.S1_at11/111+42312927..42315705NB-ARC domain containing protein
LOC_Os01g72400OsAffx.30226.2.S1_s_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_x_at5/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.2.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.30226.4.S1_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_x_at4/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.24587.1.S1_x_at3/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72400OsAffx.442.1.S1_at1/111+42319326..42323294retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g72410Os.5540.3.S1_x_at11/111+42324333..42327708Leucine Rich Repeat family protein, expressed
LOC_Os01g72410Os.5540.1.A1_at10/111+42324333..42327708Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12498.2.S1_at--532--8991Chr01:42299461..42299485 (25 bp)
TGAAGCGGCATTACGCGCTGCTGAT
LOC_Os01g72360
Os.12498.2.S1_at--777--5771Chr01:42299522..42299546 (25 bp)
GACGATCTCGGAGTGCAACAAGACT
LOC_Os01g72360
Os.12498.2.S1_at--725--2451Chr01:42299538..42299562 (25 bp)
AACAAGACTAGGAAGCTGCTACTGC
LOC_Os01g72360
Os.12498.2.S1_at--661--4651Chr01:42299609..42299633 (25 bp)
GCGTCGAACTCGAAGACGACCACCA
LOC_Os01g72360
Os.12498.2.S1_at--895--3351Chr01:42299632..42299656 (25 bp)
CACCACACTACGCTAGTTGTAGGAT
LOC_Os01g72360
Os.12498.2.S1_at--91--6651Chr01:42299647..42299671 (25 bp)
GTTGTAGGATTCTAGCTGTGCAGAT
LOC_Os01g72360
Os.12498.2.S1_at--669--5311Chr01:42299680..42299704 (25 bp)
GAAGGATTCCATTCAGACATGTACA
LOC_Os01g72360
Os.12498.2.S1_at--36--5671Chr01:42299695..42299719 (25 bp)
GACATGTACAGTCAATTGGCGAATG
LOC_Os01g72360
Os.12498.2.S1_at--759--6031Chr01:42299726..42299750 (25 bp)
GAGATTAAGACGCACTGTTCAACTA
LOC_Os01g72360
Os.12498.2.S1_at--921--2471Chr01:42299789..42299813 (25 bp)
AACACGGCACAAATACACACTTCTT
LOC_Os01g72360
Os.12498.2.S1_at--92--11Chr01:42299837..42299861 (25 bp)
CAAATTAAACGATACTTCCTCCATT
LOC_Os01g72360
Target Sequence 
TGAAGCGGCATTACGCGCTGCTGATGGGGCGGAGGAACCAGCCGTGGTCGCCGAGGCTGGAGACGATCTCGGAGTGCAAC
AAGACTAGGAAGCTGCTACTGCGGACGCTGGCGAGGCTCTTGTCGTCGCGATGAGCGGCGGCGGCGGCGCGTCGAACTCG
AAGACGACCACCACCACACTACGCTAGTTGTAGGATTCTAGCTGTGCAGATAATACATAGAAGGATTCCATTCAGACATG
TACAGTCAATTGGCGAATGGAGATTGAGATTAAGACGCACTGTTCAACTAATTAGATGGGTGAAACTGCGATATATATAG
AGCGAGAAAACACGGCACAAATACACACTTCTTTGTAAATTAAGTATTCAAAGTCTCAAATTAAACGATACTTCCTCCAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12498.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis