Browse Element(s) Details


Os.4124.1.S1_a_at

Description gb:AF271294.1
DB_XREF= gi:14279469
TID=Os.4124.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4124 (NCBI UniGene Cluster)
DEF=Oryza sativa C3meo4 mRNA, complete cds.
PROD=C3meo4
FL= gb:AF271294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5139011/11Insulinase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4124.1.S1_a_at--727--10711Chr01:29873950..29873969 (20 bp)
TTGCTCGTGCTCGTAATCAGTTGAA
LOC_Os01g51390
Os.4124.1.S1_a_at--560--5591Chr01:29874643..29874667 (25 bp)
GAAATCTGCTCTTTTACTTCACATT
LOC_Os01g51390
Os.4124.1.S1_a_at--977--9871Chr01:29874657..29874681 (25 bp)
TACTTCACATTGACGGATCCACTGC
LOC_Os01g51390
Os.4124.1.S1_a_at--695--3951Chr01:29874670..29874694 (25 bp)
CGGATCCACTGCTGTTTCTGAAAAT
LOC_Os01g51390
Os.4124.1.S1_a_at--626--6091Chr01:29874814..29874838 (25 bp)
GAGTAATGCCATTCTTAGAGCTTTT
LOC_Os01g51390
Os.4124.1.S1_a_at--906--5911Chr01:29874831..29874855 (25 bp)
GAGCTTTTTGCTCGCATTGATGCTG
LOC_Os01g51390
Os.4124.1.S1_a_at--1104--4931Chr01:29874844..29874868 (25 bp)
GCATTGATGCTGTTGACCGTGATAC
LOC_Os01g51390
Os.4124.1.S1_a_at--308--2911Chr01:29875016..29875039 (24 bp)
AAGGATATCGCCCTAGCTGCAGTGG
LOC_Os01g51390
Os.4124.1.S1_a_at--1062--1091Chr01:29875035..29875059 (25 bp)
AGTGGGACCGCTCACGAATTTGCCG
LOC_Os01g51390
Os.4124.1.S1_a_at--640--9451Chr01:29875053..29875077 (25 bp)
TTTGCCGGAGCTTAGTTGGTTTCGC
LOC_Os01g51390
Os.4124.1.S1_a_at--108--6851Chr01:29875071..29875095 (25 bp)
GTTTCGCTCACATACATACTCGGAT
LOC_Os01g51390
Target Sequence 
TTGCTCGTGCTCGTAATCAGTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAAAATAACGNC
CGTCAGATGCTAACGTNATGGGCGAGTAATGCCATTCTTAGAGCTTTTTGCTCGCATTGATGCTGTTGACCGTGATACAG
TAATGGAAACAGCTAAGGATTTCATAATTGACAAGGATATCGCCCTAGCTGCAGTGGGACCGCTCACGAATTTGCCGGAG
CTTAGTTGGTTTCGCTCACATACATACTCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4124.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis