Browse Element(s) Details


OsAffx.23425.1.S1_at

Description tigr:9629.m02689
TID=OsAffx.23425.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2808011/11hypothetical protein
LOC_Os01g514101/11Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g409401/11Glycine dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28050OsAffx.8891.1.S1_at6/111+16020025..16020822hypothetical protein
LOC_Os01g28060Os.46306.1.S1_x_at6/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28060OsAffx.940.1.S1_x_at1/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28070NANA1+16038018..16039315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28080OsAffx.23425.1.S1_at11/111+16040982..16041425hypothetical protein
LOC_Os01g28089OsAffx.2103.1.S1_at11/111+16049681..16051378hypothetical protein
LOC_Os01g28100OsAffx.23426.1.S1_at11/111+16053088..16053664hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005961cellular_componentglycine dehydrogenase complex (decarboxylating)
GO:0004375molecular_functionglycine dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23425.1.S1_at--124--5313Chr01:29889962..29889991 (23 bp)
GAAGGAAAGCTCAAACAAGGACAAC
LOC_Os01g51410
OsAffx.23425.1.S1_at--851--5611Chr01:16041325..16041349 (25 bp)
GACAACGAGTTGAAGACCTAACGGA
LOC_Os01g28080
OsAffx.23425.1.S1_at--128--1271Chr01:16041297..16041321 (25 bp)
AGATAGACATGTGTTGAAGCAACTA
LOC_Os01g28080
OsAffx.23425.1.S1_at--1072--3971Chr01:16041223..16041247 (25 bp)
CGGTGGTGTTCCTATATGTGACGTT
LOC_Os01g28080
OsAffx.23425.1.S1_at--739--7411Chr01:16041218..16041242 (25 bp)
GTGTTCCTATATGTGACGTTCAGCG
LOC_Os01g28080
OsAffx.23425.1.S1_at--495--10191Chr01:16041211..16041235 (25 bp)
TATATGTGACGTTCAGCGATGTGGG
LOC_Os01g28080
OsAffx.23425.1.S1_at--660--5851Chr01:16041078..16041102 (25 bp)
GACCACATCCCATGACATTGGGTTT
LOC_Os01g28080
OsAffx.23425.1.S1_at--885--671Chr01:16041067..16041091 (25 bp)
ATGACATTGGGTTTTCCGACAGGAC
LOC_Os01g28080
OsAffx.23425.1.S1_at--192--10771Chr01:16041061..16041085 (25 bp)
TTGGGTTTTCCGACAGGACACTGGT
LOC_Os01g28080
OsAffx.23425.1.S1_at--217--6811Chr01:16041057..16041081 (25 bp)
GTTTTCCGACAGGACACTGGTAGAG
LOC_Os01g28080
OsAffx.23425.1.S1_at--63--3431Chr01:16041048..16041072 (25 bp)
CAGGACACTGGTAGAGAAAACGTTT
LOC_Os01g28080
Target Sequence 
GAAGGAAAGCTCAAACAAGGACAACGAGTTGAAGACCTAACGGAAGAAGATAGACATGTGTTGAAGCAACTAAACAAGCG
GAAGCTGCACTGGCTGGACGGTGTTCACGCCTTCTTCACGGCGGTGGTGTTCCTATATGTGACGTTCAGCGATGTGGGGA
TCCAGAAATGCCTCTTCCCGATAACCGGCCACGACACCATGGAGCTGCTCAAGAATATGCCCCTGGGTATGTCCTTCCTC
TCCAGCTTCGTCTTCATGATCTTCCCGACCACATCCCATGACATTGGGTTTTCCGACAGGACACTGGTAGAGAAAACGTT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis