Browse Element(s) Details


Os.1592.1.S1_at

Description gb:AK103899.1
DB_XREF= gi:32989108
TID=Os.1592.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative H+-transporting ATP synthase (P0456F08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150J04, full insert sequence.
FL= gb:AK103899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5138011/11Vacuolar ATP synthase subunit B isoform 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1592.1.S1_at--494--3211Chr01:29868584..29868608 (25 bp)
CAAGGACGTACAGGCGATGAAGGCA
LOC_Os01g51380
Os.1592.1.S1_at--510--9071Chr01:29868741..29868764 (24 bp)
TGCTGTACCTCGAGTTTCTTGACAA
LOC_Os01g51380
Os.1592.1.S1_at--236--6831Chr01:29868753..29868777 (25 bp)
GTTTCTTGACAAGTTCGAGCGGAAG
LOC_Os01g51380
Os.1592.1.S1_at--452--6711Chr01:29868765..29868789 (25 bp)
GTTCGAGCGGAAGTTCGTGACACAA
LOC_Os01g51380
Os.1592.1.S1_at--977--251Chr01:29868795..29868819 (25 bp)
ATATGACACACGCAACATCTTCCAG
LOC_Os01g51380
Os.1592.1.S1_at--956--4311Chr01:29868880..29868904 (25 bp)
CCAGCGAAAACCCTTGACCAGTATT
LOC_Os01g51380
Os.1592.1.S1_at--66--1211Chr01:29868899..29868923 (25 bp)
AGTATTATAGCCGTGATGCCTCCCA
LOC_Os01g51380
Os.1592.1.S1_at--466--8651Chr01:29869050..29869074 (25 bp)
TGGGCTTCCATCATTGTTGTCCCAA
LOC_Os01g51380
Os.1592.1.S1_at--568--9591Chr01:29869060..29869084 (25 bp)
TCATTGTTGTCCCAAGCACACCATG
LOC_Os01g51380
Os.1592.1.S1_at--1051--8571Chr01:29869214..29869238 (25 bp)
TGGTTTTCGCCTGTCAATTGAGTTT
LOC_Os01g51380
Os.1592.1.S1_at--406--3171Chr01:29869229..29869253 (25 bp)
AATTGAGTTTCAGACCCTCTTGGCT
LOC_Os01g51380
Target Sequence 
CAAGGACGTACAGGCGATGAAGGCAGTGGTTNGGAGAGGAAGCGNTGTCATCAGAGGACCTGCTGTACCTCGAGTTTCTT
GACAAGTTCGAGCGGAAGTTCGTGACACAAGGAGCATATGACACACGCAACATCTTCCAGTCGCTTGACCTCGCCTGGTC
ACTACTGCGCATCTTTCNCCGAGAGCTGCTTCACCGTATACCAGCGAAAACCCTTGACCAGTATTATAGCCGTGATGCCT
CCCACTGATCTGCAAAGGGTCGTGTGTAATAAGAAAAAAAACCATCCCGGACTCCCACTTCTTCTCTTTCATTTTTGCCA
CCAATGCATTCATTATTTTTTGTGTAAAAAACACGAATTATCTAGTGATGTGGGCTTCCATCATTGTTGTCCCAAGCACA
CCATGTATCATATTTATCTTCTTTTTTGGAAGAAAATGTATTATTTTCTTGCCGTGGAAAAATGAATAAGTGAGGACNGA
GTGAGCTAGGGATTTGGTTAATGTAAGAACACAATGAAATAAGCCATTTGCCTCATGGTTTTCGCCTGTCAATTGAGTTT
CAGACCCTCTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis