Browse Element(s) Details


Os.50904.1.S1_at

Description gb:AK059366.1
DB_XREF= gi:32969384
TID=Os.50904.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E07, full insert sequence.
FL= gb:AK059366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4632011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50904.1.S1_at--640--3151Chr04:27242302..27242326 (25 bp)
AATTCTTCTGGAGATGCTTGCTCAA
LOC_Os04g46320
Os.50904.1.S1_at--854--8251Chr04:27242272..27242296 (25 bp)
GGCAGCAAACAGTAGCTCACCCAAT
LOC_Os04g46320
Os.50904.1.S1_at--455--3811Chr04:27242232..27242256 (25 bp)
CTGCCTTCCTCTTTCAAAGATCTAG
LOC_Os04g46320
Os.50904.1.S1_at--525--6511Chr04:27242194..27242218 (25 bp)
GATATCGGATGCATTCAGTTCTGAG
LOC_Os04g46320
Os.50904.1.S1_at--207--5471Chr04:27242115..27242139 (25 bp)
GAACTGGCAACTGCTTGCTGTAACC
LOC_Os04g46320
Os.50904.1.S1_at--1083--9651Chr04:27242088..27242112 (25 bp)
TCACCATCCTTGAGACCAGATACCA
LOC_Os04g46320
Os.50904.1.S1_at--502--2131Chr04:27242026..27242050 (25 bp)
ACAGGGTGCACATTGGTCACCGGCA
LOC_Os04g46320
Os.50904.1.S1_at--1046--151Chr04:27241947..27241971 (25 bp)
ATTATCCATCTGTTATCCCTAGTGC
LOC_Os04g46320
Os.50904.1.S1_at--436--2711Chr04:27241852..27241876 (25 bp)
AAGCATGTATAGTTTCCACCCAACC
LOC_Os04g46320
Os.50904.1.S1_at--389--6851Chr04:27241787..27241811 (25 bp)
GTATGTCTGGACCAAGTTTTCCGTA
LOC_Os04g46320
Os.50904.1.S1_at--842--10371Chr04:27241771..27241795 (25 bp)
TTTTCCGTACGAGACTTGGGCCAAT
LOC_Os04g46320
Target Sequence 
AATTCTTCTGGAGATGCTTGCTCAAAAGGAGGCAGCAAACAGTAGCTCACCCAATGCCCGTGACATCCACCTGCCTTCCT
CTTTCAAAGATCTAGTTCTGGAGAGGAAGATATCGGATGCATTCAGTTCTGAGCTAGTCAAGCAAAGTAAGAACTCAGGC
AAGGAGCAGAACCTAAATGCATTCTTTGAACTGGCAACTGCTTGCTGTAACCCATCACCATCCTTGAGACCAGATACCAA
GCGTATACTCAAAATGCTTGAAGAGATATCAAGATGACAGGGTGCACATTGGTCACCGGCATCCTATTTAGAAAGTGTTT
CGTTATAGCAAGATAGCATTAATATTTATAAATGTATTATCCATCTGTTATCCCTAGTGCTCAAGCATACACCAGAGCTT
GTACTGGGGAAATCCAGAAATGTGAGAATGATGTACACTAATGGAGAAACAAGCATGTATAGTTTCCACCCAACCTAGAG
GAACTCATATGAACAGGACAATGATGTTGTTTTATGTATGTCTGGACCAAGTTTTCCGTACGAGACTTGGGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis