Browse Element(s) Details


Os.24616.1.S1_s_at

Description gb:AK063594.1
DB_XREF= gi:32973612
TID=Os.24616.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B03, full insert sequence.
FL= gb:AK063594.1 gb:AK064433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4631011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24616.1.S1_s_at--105--751Chr04:27239128..27239152 (25 bp)
ATGTTTCCTTTACGACAATGACCAG
LOC_Os04g46310
Os.24616.1.S1_s_at--46--4291Chr04:27239166..27239547 (25 bp)
CCTCCAATTTCCAGGCTCTTTTGAA
LOC_Os04g46310
Os.24616.1.S1_s_at--230--3451Chr04:27239561..27239585 (25 bp)
CAGTTTGTTATTGAGCCACCTGAAC
LOC_Os04g46310
Os.24616.1.S1_s_at--877--651Chr04:27239628..27239652 (25 bp)
ATGAAACTCTTGTTTTGTGCTTGGG
LOC_Os04g46310
Os.24616.1.S1_s_at--312--8271Chr04:27239659..27239683 (25 bp)
GGCAGTTACTGCACGGTCAGATGTT
LOC_Os04g46310
Os.24616.1.S1_s_at--498--6271Chr04:27239678..27239702 (25 bp)
GATGTTTTGTGGAAGCCTCTTAACC
LOC_Os04g46310
Os.24616.1.S1_s_at--1044--3251Chr04:27239975..27239999 (25 bp)
CAAAGTTCGCCCCAAAATGCTCGGT
LOC_Os04g46310
Os.24616.1.S1_s_at--445--7391Chr04:27240009..27240033 (25 bp)
GTGAGGCACATGGTCCAACAGCTAA
LOC_Os04g46310
Os.24616.1.S1_s_at--1113--71Chr04:27240066..27240090 (25 bp)
ATTCCATTCCTTGCTGAATTACTCG
LOC_Os04g46310
Os.24616.1.S1_s_at--103--3151Chr04:27240082..27240106 (25 bp)
AATTACTCGAGGACGTGGAGCTCCC
LOC_Os04g46310
Os.24616.1.S1_s_at--976--8531Chr04:27240097..27240121 (25 bp)
TGGAGCTCCCTGTTAAGACTCTAGC
LOC_Os04g46310
Target Sequence 
ATGTTTCCTTTACGACAATGACCAGAAGATCCTTGATTCCTCCAATTTCCAGGCTCTTTTGAAACCTATNGTTTCTCAGT
TTGTTATTGAGCCACCTGAACATNTTGAATCAGTTCCAGAAGCTCCATCAGTTGATGAAGTTGATGAAACTCTTGTTTTG
TGCTTGGGGCAAATGGCAGTTACTGCACGGTCAGATGTTTTGTGGAAGCCTCTTAACCACGAGGTGCTGATGANGACAAG
GNGTGACAAAGTTCGCCCCAAAATGCTCGGTNTGAAGGTTGTGAGGCACATGGTCCAACAGCTAAAGGAGGAATACGTGG
TTCTCCTCCCGGAGACCATTCCATTCCTTGCTGAATTACTCGAGGACGTGGAGCTCCCTGTTAAGACTCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24616.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis