Browse Element(s) Details


OsAffx.4107.1.S1_s_at

Description tigr:9632.m04465
TID=OsAffx.4107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAT4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4635011/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4107.1.S1_s_at--117--4651Chr04:27258955..27258979 (25 bp)
GCGTAGCGAATATTTAGCTGGTCCA
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--295--851Chr04:27258876..27258900 (25 bp)
ATGGCACGGTGGTTTGTTCTGTCCC
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--718--7691Chr04:27258822..27258846 (25 bp)
GGGTCAGTTTGTTTGTTGGACAGTC
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--138--10491Chr04:27258766..27258790 (25 bp)
TTAACACGGGTAGGCATGTGCATTT
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--260--9071Chr04:27258748..27258772 (25 bp)
TGCATTTGGTCTCTGCTGAGCTTAA
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--962--10071Chr04:27258710..27258734 (25 bp)
TAGTGTGTTCTTTAATTGGCCGGCC
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--548--5551Chr04:27258683..27258707 (25 bp)
GAAAGCCATAGCTTGCATGCATGCA
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--783--4991Chr04:27258661..27258685 (25 bp)
GCATGAAAGTTTCCTTGTGTTTTGA
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--928--2551Chr04:27258620..27258644 (25 bp)
AACTGAAAGCGTTCGATCGGTTTGT
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--936--6391Chr04:27258606..27258630 (25 bp)
GATCGGTTTGTTCGCTTAATCATGT
LOC_Os04g46350
OsAffx.4107.1.S1_s_at--652--331Chr04:27258523..27258547 (25 bp)
ATAATCGAATTGAATTGCCCGGTCG
LOC_Os04g46350
Target Sequence 
GCGTAGCGAATATTTAGCTGGTCCAGGGGAAAGTTGGATATGGTGGGATACGGGTGTAGGGGAAGTGGGGCGCAGCGGGA
TGGCACGGTGGTTTGTTCTGTCCCGGCTGACGATGACGGCGATGATGATGAGAGGGTCAGTTTGTTTGTTGGACAGTCGT
TTCTCTTAAGCTTGATTCTAGCGATTAATTTAACACGGGTAGGCATGTGCATTTGGTCTCTGCTGAGCTTAATTTAGGTG
ATTAGTAGTGTGTTCTTTAATTGGCCGGCCGGGAAAGCCATAGCTTGCATGCATGCATGAAAGTTTCCTTGTGTTTTGAT
GGGATATTATCCGCTAACTGAAAGCGTTCGATCGGTTTGTTCGCTTAATCATGTGAACGGCTAAATATAAATATGTACTA
CTACTGGATATCGAGTAACGAATCATCTGGATATAATCGAATTGAATTGCCCGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4107.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis