Browse Element(s) Details


OsAffx.4219.1.S1_at

Description tigr:9633.m00011
TID=OsAffx.4219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0110011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4219.1.S1_at--461--3231Chr05:74745..74769 (25 bp)
CAAGACGACGTGTCCGTATCCGATT
LOC_Os05g01100
OsAffx.4219.1.S1_at--658--7451Chr05:74736..74760 (25 bp)
GTGTCCGTATCCGATTCCGATCAGT
LOC_Os05g01100
OsAffx.4219.1.S1_at--21--6451Chr05:74718..74742 (25 bp)
GATCAGTCGGAGGACCTCACCAATG
LOC_Os05g01100
OsAffx.4219.1.S1_at--52--8491Chr05:74687..74711 (25 bp)
TGGCGGACATGCTGTCGGCGCTCCA
LOC_Os05g01100
OsAffx.4219.1.S1_at--906--4511Chr05:74658..74682 (25 bp)
GCCGCGCTCTTGGACATGGATGCTG
LOC_Os05g01100
OsAffx.4219.1.S1_at--675--2611Chr05:74441..74593 (25 bp)
AACCCGTATCAACGCTCAAGCTGAA
LOC_Os05g01100
OsAffx.4219.1.S1_at--344--8331Chr05:74307..74331 (25 bp)
GGCTCCCACTCACGGATGTTAGGAA
LOC_Os05g01100
OsAffx.4219.1.S1_at--1073--1451Chr05:74274..74298 (25 bp)
AGAAGATGATCTCCTCACTGCTGGG
LOC_Os05g01100
OsAffx.4219.1.S1_at--270--4851Chr05:74230..74254 (25 bp)
GCTACCGCTAGCCATGACCATGGAG
LOC_Os05g01100
OsAffx.4219.1.S1_at--482--3291Chr05:74205..74229 (25 bp)
CAAAGCTTGCGCTTGCGGGAGAGAT
LOC_Os05g01100
OsAffx.4219.1.S1_at--303--6351Chr05:74183..74207 (25 bp)
GATGCGAGGCCTTTTGGCCAAAGTT
LOC_Os05g01100
Target Sequence 
CAAGACGACGTGTCCGTATCCGATTCCGATCAGTCGGAGGACCTCACCAATGTCGCCGTGGCGGACATGCTGTCGGCGCT
CCACGCCGCCGCGCTCTTGGACATGGATGCTGCCAATGTCCACCTGCTCCGCCGCTTCTTTACCCTGCACAAGACCACCT
CCCCTTCTTCCTCCTCAACCCGTATCAACGCTCAAGCTGAATTCAATCCAAGCAGCAGCCGCCAAAAGGAGGAGGAGACT
ACTAGTAAAACCAAGAAGAAGAAGAAGAAAGAAGCAGCAGCAGCAGCTTCTACTCCAACAACAACAATCAGGCTCCCACT
CACGGATGTTAGGAACAATCTCCAGAAGATGATCTCCTCACTGCTGGGCCGCTCGCCTACAGCTACTGCTACCGCTAGCC
ATGACCATGGAGCAAAGCTTGCGCTTGCGGGAGAGATGCGAGGCCTTTTGGCCAAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis