Browse Element(s) Details


OsAffx.4258.1.S1_at

Description tigr:9633.m00520
TID=OsAffx.4258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0601011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05990OsAffx.25962.1.S1_at11/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g05990OsAffx.14185.1.S1_x_at1/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g06000OsAffx.26752.1.S1_at11/115+2981442..2981852hypothetical protein
LOC_Os05g06010OsAffx.4258.1.S1_at11/115+2985922..2986363hypothetical protein
LOC_Os05g06019OsAffx.4416.1.S1_at2/115+2995876..2996421retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06028OsAffx.4416.1.S1_at2/115+3001526..3002071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06040NANA5+3004717..3005136hypothetical protein
LOC_Os05g06050NANA5+3008942..3011231Core-2/I-Branching enzyme family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4258.1.S1_at--910--4751Chr05:2985956..2985980 (25 bp)
GCTGCACCACTGAGTTGCTCTTGGG
LOC_Os05g06010
OsAffx.4258.1.S1_at--305--1971Chr05:2985964..2985988 (25 bp)
ACTGAGTTGCTCTTGGGCAAATGTC
LOC_Os05g06010
OsAffx.4258.1.S1_at--849--4591Chr05:2986014..2986038 (25 bp)
GCGAACGTCGAGGACCCCGATGAAT
LOC_Os05g06010
OsAffx.4258.1.S1_at--645--351Chr05:2986046..2986070 (25 bp)
ATAAGTTTGTAAAGTGCCCTAATCT
LOC_Os05g06010
OsAffx.4258.1.S1_at--883--2151Chr05:2986157..2986181 (25 bp)
ACACCATATGCTTACAGATTTTTTG
LOC_Os05g06010
OsAffx.4258.1.S1_at--893--171Chr05:2986174..2986198 (25 bp)
ATTTTTTGTGGGAAGATCAGTATGC
LOC_Os05g06010
OsAffx.4258.1.S1_at--935--6431Chr05:2986188..2986212 (25 bp)
GATCAGTATGCGCAATTTTTGGCCA
LOC_Os05g06010
OsAffx.4258.1.S1_at--1159--591Chr05:2986195..2986219 (25 bp)
ATGCGCAATTTTTGGCCAATGGCCG
LOC_Os05g06010
OsAffx.4258.1.S1_at--1111--2951Chr05:2986212..2986236 (25 bp)
AATGGCCGTGTAGGTCTGGAACATC
LOC_Os05g06010
OsAffx.4258.1.S1_at--14--8171Chr05:2986229..2986253 (25 bp)
GGAACATCAGACAGGACATGGACAT
LOC_Os05g06010
OsAffx.4258.1.S1_at--325--9751Chr05:2986255..2986279 (25 bp)
TAATGTTGAAGCAATGTCATCGATG
LOC_Os05g06010
Target Sequence 
GCTGCACCACTGAGTTGCTCTTGGGCAAATGTCCATTGTGCGGGACCCAGTTGGAGGCGCGAACGTCGAGGACCCCGATG
AATCCAAACAATAAGTTTGTAAAGTGCCCTAATCTTGAGCATACACCATATGCTTACAGATTTTTTGTGGGAAGATCAGT
ATGCGCAATTTTTGGCCAATGGCCGTGTAGGTCTGGAACATCAGACAGGACATGGACATTTAATGTTGAAGCAATGTCAT
CGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis