Browse Element(s) Details


OsAffx.4338.1.S1_at

Description tigr:9633.m01300
TID=OsAffx.4338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to beta-amyrin synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g148008/11Cycloartenol synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14750Os.5636.1.S1_at11/115+8358207..8361726Protein kinase PVPK-1, putative, expressed
LOC_Os05g14760NANA5+8362353..8362703hypothetical protein
LOC_Os05g14770OsAffx.26892.1.S1_at11/115+8366366..8367754hypothetical protein
LOC_Os05g14780NANA5+8371221..8374737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.29786.1.S1_x_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.23450.1.S1_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14800OsAffx.4338.1.S1_at8/115+8386618..8395281Cycloartenol synthase, putative
LOC_Os05g14810NANA5+8397335..8399231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g14820OsAffx.14697.1.S1_at10/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14820Os.51403.1.S1_at1/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14830NANA5+8409835..8410271hypothetical protein
LOC_Os05g14840OsAffx.4339.1.S1_at9/115+8413389..8414614hypothetical protein
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4338.1.S1_at--848--1031Chr05:8391264..8391288 (25 bp)
AGGTCCTTGAAAACACTCCAGACAA
LOC_Os05g14800
OsAffx.4338.1.S1_at--566--5531Chr05:8391256..8391280 (25 bp)
GAAAACACTCCAGACAATGAAGCTT
LOC_Os05g14800
OsAffx.4338.1.S1_at--547--1271Chr05:8391220..8391244 (25 bp)
AGATCAAAAGGTTCGTGGACACTAT
LOC_Os05g14800
OsAffx.4338.1.S1_at--528--6711Chr05:8391210..8391234 (25 bp)
GTTCGTGGACACTATCAACAGCAGA
LOC_Os05g14800
OsAffx.4338.1.S1_at--730--4351Chr05:8390116..8390140 (25 bp)
CCAGATCTCGCAGGAGATGCCATAA
LOC_Os05g14800
OsAffx.4338.1.S1_at--528--6111Chr05:8388353..8388377 (25 bp)
GAGTGCGAGAGAACTACACATTGGT
LOC_Os05g14800
OsAffx.4338.1.S1_at--825--9851NONE
TACACATTGGTTAGAGGTTCTCAAC
NONE
OsAffx.4338.1.S1_at--766--6631NONE
GTTGATTATCCGTTTGGTACTTGGG
NONE
OsAffx.4338.1.S1_at--875--9172Chr12:20069380..20069400 (21 bp)
TGCCATAAAAGGATTAGTTGCTGCT
NONE
OsAffx.4338.1.S1_at--277--7651Chr05:8387022..8387046 (25 bp)
GGGAGAGACATACCTTTCAAGTGAA
LOC_Os05g14800
OsAffx.4338.1.S1_at--995--1111NONE
AGTGAAACCGAGGAATCAGCCGAGG
NONE
Target Sequence 
AGGTCCTTGAAAACACTCCAGACAATGAAGCTTATTACCGCCATAGATCAAAAGGTTCGTGGACACTATCAACAGCAGAT
AATGGATGGTGTGTATCTGATTGTACTGCTGAAGCACTTAAGGCCTTACTTATGCTATCAAAGATCTCTCCAGATCTCGC
AGGAGATGCCATAAATGGAGAAAGGTTGTATGATGCAGTGGATGGCATGCTCTCTTTCATGAATAAAGATGGCACCTTTT
CAACATATGAGTGCGAGAGAACTACACATTGGTTAGAGGTTCTCAACCCGTCTAAAACTTTTCTGAACATTATTGTTGAT
TATCCGTTTGGTACTTGGGGTATATGTTTCACTTATGGAACATTCTTTGCCATAAAAGGATTAGTTGCTGCTGGAAGAAC
ATATGAAAATAGCTCTTCCATTAAAAAAGCATGCAACTTTATTTTGTCAAAACAACTTAGTACAGGTGGATGGGGAGAGA
CATACCTTTCAAGTGAAACCGAGGAATCAGCCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis