Browse Element(s) Details


OsAffx.4390.1.S1_at

Description tigr:9633.m01909
TID=OsAffx.4390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2090010/11hypothetical protein
LOC_Os09g120801/11hypothetical protein
LOC_Os04g198901/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20860OsAffx.31083.1.S1_x_at3/115+12232719..12233815hypothetical protein
LOC_Os05g20870NANA5+12235620..12237066transposon protein, putative, unclassified
LOC_Os05g20880OsAffx.22629.1.S1_at1/115+12244620..12246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20890OsAffx.24330.2.S1_at1/115+12246665..12248988retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20900OsAffx.4390.1.S1_at10/115+12252230..12255464hypothetical protein
LOC_Os05g20900OsAffx.27854.1.S1_at3/115+12252230..12255464hypothetical protein
LOC_Os05g20910NANA5+12258713..12259006hypothetical protein
LOC_Os05g20920NANA5+12280408..12282641Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4390.1.S1_at--938--9331Chr05:12255085..12255109 (25 bp)
TCGAACCATTTTTTACGGCACCATT
LOC_Os05g20900
OsAffx.4390.1.S1_at--1006--8231Chr05:12255073..12255093 (21 bp)
GGCACCATTTTTTACGCAACGGACG
LOC_Os05g20900
OsAffx.4390.1.S1_at--570--5153Chr09:6819355..6819563 (25 bp)
GCAACGGACGAAGAAGACAGCGTTC
LOC_Os09g12080
OsAffx.4390.1.S1_at--449--2611Chr05:12254947..12254971 (25 bp)
AACGCCGCCATGTTCAAGTTGGCTC
LOC_Os05g20900
OsAffx.4390.1.S1_at--1132--2811Chr05:12254932..12254956 (25 bp)
AAGTTGGCTCGCCACTGGATGTCGA
LOC_Os05g20900
OsAffx.4390.1.S1_at--684--831NONE
ATGGAAGCCCGGTATGCCCCGATTG
NONE
OsAffx.4390.1.S1_at--572--5892Chr10:3732743..3732762 (20 bp)
GAGCTCCACCTATACAACCTAGTAG
NONE
OsAffx.4390.1.S1_at--144--2911Chr10:3732769..3732792 (24 bp)
ATAGGGACAATTCGGCAAACATGCA
NONE
OsAffx.4390.1.S1_at--227--111Chr05:12252641..12252759 (25 bp)
ATTCGGCAAACATGCATGATTGATA
LOC_Os05g20900
OsAffx.4390.1.S1_at--517--8111Chr05:12252603..12252627 (25 bp)
GGACTTGAATCATGACCGTTCCATT
LOC_Os05g20900
OsAffx.4390.1.S1_at--790--3111Chr05:12252300..12252598 (25 bp)
AATTTCCCAAGATGGTGATCAACCA
LOC_Os05g20900
Target Sequence 
TCGAACCATTTTTTACGGCACCATTTTTTACGCAACGGACGAAGAAGACAGCGTTCGGGAGCGTGAACTTCAATGTTCGC
CCCGAGCACTCTGATCTTTGGCCGGTCAACGCCGCCATGTTCAAGTTGGCTCGCCACTGGATGTCGAAGTGGTTTTACCA
CTCCATCCCCTTCGAGGCCGGGTCTGAGTCGGCGAAAGCTCTCCGATGGCGGCGCAGGGCGATCGCGCCGAACAAGAAGC
CCAAGGTCACCGTCGATGGCGCCATGGAAGCCCGGTATGCCCCGATTGATCCCTACCGAGCTCCACCTATACAACCTAGT
AGAATAGGGACAATTCGGCAAACATGCATGATTGATAGGAGGAAAAAGAAGGACTTGAATCATGACCGTTCCATTCATCA
ATTTCCCAAGATGGTGATCAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis