Browse Element(s) Details


OsAffx.4459.1.S1_at

Description tigr:9633.m02625
TID=OsAffx.4459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28650OsAffx.27064.1.S1_at11/115+16730886..16731134hypothetical protein
LOC_Os05g28660OsAffx.21375.2.S1_at1/115+16732685..16735017retrotransposon protein, putative, LINE subclass
LOC_Os05g28670NANA5+16736215..16739239hypothetical protein
LOC_Os05g28680OsAffx.20387.1.S1_x_at2/115+16740304..16746018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28690OsAffx.4459.1.S1_at11/115+16749313..16750966hypothetical protein
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4459.1.S1_at--924--10731Chr05:16750059..16750083 (25 bp)
TTGCATACGAAAACGATTGCCATGG
LOC_Os05g28690
OsAffx.4459.1.S1_at--258--831Chr05:16750080..16750104 (25 bp)
ATGGACCTCCTGTTTCGCGCGCAAA
LOC_Os05g28690
OsAffx.4459.1.S1_at--466--3851Chr05:16750089..16750113 (25 bp)
CTGTTTCGCGCGCAAAATTTGCAAA
LOC_Os05g28690
OsAffx.4459.1.S1_at--755--2031Chr05:16750124..16750148 (25 bp)
ACTATGAGGAGTTGATGCGCTATCT
LOC_Os05g28690
OsAffx.4459.1.S1_at--32--1251Chr05:16750133..16750157 (25 bp)
AGTTGATGCGCTATCTCCGCAGGAA
LOC_Os05g28690
OsAffx.4459.1.S1_at--1143--451Chr05:16750145..16750584 (25 bp)
ATCTCCGCAGGAACCTTGCATTATA
LOC_Os05g28690
OsAffx.4459.1.S1_at--993--6971Chr05:16750768..16750792 (25 bp)
GTACCATCTTGCAGACCACATCTGT
LOC_Os05g28690
OsAffx.4459.1.S1_at--795--5851Chr05:16750781..16750805 (25 bp)
GACCACATCTGTCGAGTAATGAGGA
LOC_Os05g28690
OsAffx.4459.1.S1_at--1153--6151Chr05:16750801..16750825 (25 bp)
GAGGATATCACCTTTCAAATATTAC
LOC_Os05g28690
OsAffx.4459.1.S1_at--346--3111Chr05:16750818..16750842 (25 bp)
AATATTACTGTGATGTGCTTTTTGA
LOC_Os05g28690
OsAffx.4459.1.S1_at--291--2731Chr05:16750876..16750900 (25 bp)
AAGCAAAGCATCTCAGGCCGTGTTT
LOC_Os05g28690
Target Sequence 
TTGCATACGAAAACGATTGCCATGGACCTCCTGTTTCGCGCGCAAAATTTGCAAAGAGGGAGAATACTATGAGGAGTTGA
TGCGCTATCTCCGCAGGAACCTTGCATTATACCCGTACCATCTTGCAGACCACATCTGTCGAGTAATGAGGATATCACCT
TTCAAATATTACTGTGATGTGCTTTTTGAAGCTATGAAGAATGGTAACTGCTTATTAATAGAAAGCAAAGCATCTCAGGC
CGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis