Browse Element(s) Details


OsAffx.4547.1.S1_at

Description tigr:9633.m03477
TID=OsAffx.4547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37590NANA5+21909634..21915256retrotransposon protein, putative, unclassified
LOC_Os05g37600OsAffx.14996.1.S1_at11/115+21922087..21925411Acyltransferase family protein, expressed
LOC_Os05g37610NANA5+21929385..21929915hypothetical protein
LOC_Os05g37620Os.46012.2.S1_x_at7/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.27088.1.A1_x_at4/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.46012.3.S1_x_at2/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37630OsAffx.4547.1.S1_at11/115+21939850..21940554hypothetical protein
LOC_Os05g37640Os.51802.1.S1_at11/115+21947505..21948151expressed protein
LOC_Os05g37650OsAffx.30938.1.S1_at2/115+21955043..21955417hypothetical protein
LOC_Os05g37660Os.18463.1.S1_at11/115+21956892..21958778AER, putative, expressed
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4547.1.S1_at--249--311Chr05:21940424..21940448 (25 bp)
ATAGCCGTCGCTTCTTCAAATCCGA
LOC_Os05g37630
OsAffx.4547.1.S1_at--234--3752Chr03:21652954..21652973 (20 bp)
CTCAAATCTACTCAAGTGGCAGCGG
NONE
OsAffx.4547.1.S1_at--407--1331Chr05:21940313..21940337 (25 bp)
AGAGTGGCAACATGGCCTCGAGCTC
LOC_Os05g37630
OsAffx.4547.1.S1_at--993--8492Chr06:15721149..15721421 (25 bp)
TGGCAGCCACCGAGGAGGCTCCTCA
NONE
OsAffx.4547.1.S1_at--281--8011Chr05:21940238..21940262 (25 bp)
GGAGGCTCCTCAAGCAGTCGGTGAT
LOC_Os05g37630
OsAffx.4547.1.S1_at--1133--2711Chr05:21940227..21940251 (25 bp)
AAGCAGTCGGTGATCCTCTCTCTTC
LOC_Os05g37630
OsAffx.4547.1.S1_at--248--4371Chr05:21940184..21940208 (25 bp)
CCACTGTCGGCGGAGTAGTTGAGAA
LOC_Os05g37630
OsAffx.4547.1.S1_at--409--9671Chr05:21940137..21940161 (25 bp)
TCACCGTCTTCCAGGATTTGTCCTC
LOC_Os05g37630
OsAffx.4547.1.S1_at--8--1791Chr05:21940088..21940112 (25 bp)
ACCGAGCCTGGGACGGTCAAGCGAT
LOC_Os05g37630
OsAffx.4547.1.S1_at--424--3931Chr05:21939998..21940022 (25 bp)
CGGCGGCACGAGATACGAAAGCTGA
LOC_Os05g37630
OsAffx.4547.1.S1_at--839--2351Chr05:21939981..21940005 (25 bp)
AAAGCTGAAGCAGCGAACTCCGCAG
LOC_Os05g37630
Target Sequence 
ATAGCCGTCGCTTCTTCAAATCCGATAGCCCCCACCTCAAATCTACTCAAGTGGCAGCGGCTGGCGATGAGGATGAGATG
GACGTAGCAGGGTGGCCGCGAGGCTCGAGGCAGAGTGGCAACATGGCCTCGAGCTCTTCACCGTCGGCCTCCTTCTCTCC
TCTTCCCCTACCATGGCAGCCACCGAGGAGGCTCCTCAAGCAGTCGGTGATCCTCTCTCTTCCCCTCCTCCCTGTCGTCG
CCACTGTCGGCGGAGTAGTTGAGAAAAGAAGGGGATGGTGGTCGCCGTCACCGTCTTCCAGGATTTGTCCTCCACCAGGC
AGCCGCTGCCTCCCTCACCGAGCCTGGGACGGTCAAGCGATGGCGGGCGGGTCAAGCGGTAGCGGGCGGTCAGCGCGCAC
GGTGGCGCGCAGGAGCGGGAGGCTGGCGGCGGCACGAGATACGAAAGCTGAAGCAGCGAACTCCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis