Browse Element(s) Details


OsAffx.4632.2.S1_at

Description tigr:9633.m04320
TID=OsAffx.4632.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4606011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46079NANA5+26646611..26647236NA
LOC_Os05g46090OsAffx.15120.1.S1_at11/115+26649139..26652880Leucine Rich Repeat family protein
LOC_Os05g46100OsAffx.27336.1.S1_at11/115+26654579..26654863hypothetical protein
LOC_Os05g46110Os.1924.1.S1_at1/115+26656128..26659454retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4632.2.S1_at--1064--3651Chr05:26634637..26634661 (25 bp)
CTTCAACCGCAACGGACGGGAGCAT
LOC_Os05g46060
OsAffx.4632.2.S1_at--447--5931Chr05:26634656..26634680 (25 bp)
GAGCATGAAGCTTTCCTTGTCCTCA
LOC_Os05g46060
OsAffx.4632.2.S1_at--184--5531Chr05:26634689..26634713 (25 bp)
GAAAACGCGCTTGTGTGCGAACCGA
LOC_Os05g46060
OsAffx.4632.2.S1_at--589--7891Chr05:26634714..26634738 (25 bp)
GGTTCCATGGATCAAGCGTGCAAGT
LOC_Os05g46060
OsAffx.4632.2.S1_at--1052--7331Chr05:26634731..26634755 (25 bp)
GTGCAAGTCCTCTCGAATTTGGTGC
LOC_Os05g46060
OsAffx.4632.2.S1_at--1001--10831Chr05:26634749..26634773 (25 bp)
TTGGTGCGCTTCATTCCGCGTGGAT
LOC_Os05g46060
OsAffx.4632.2.S1_at--240--7811Chr05:26634832..26634856 (25 bp)
GGTCGTCAGGTTAGGCTCTGCGATT
LOC_Os05g46060
OsAffx.4632.2.S1_at--476--9491Chr05:26634848..26634872 (25 bp)
TCTGCGATTCAGTACGATCCGTCGG
LOC_Os05g46060
OsAffx.4632.2.S1_at--587--10511Chr05:26634920..26634944 (25 bp)
TTCAACTGCATATGGAACTCGATGT
LOC_Os05g46060
OsAffx.4632.2.S1_at--394--2551Chr05:26634935..26634959 (25 bp)
AACTCGATGTCTGAGCTCGAAGGCC
LOC_Os05g46060
OsAffx.4632.2.S1_at--304--2291Chr05:26635127..26635151 (25 bp)
AAATGGTTGGAAGCGCCTTTCATCC
LOC_Os05g46060
Target Sequence 
CTTCAACCGCAACGGACGGGAGCATGAAGCTTTCCTTGTCCTCACCACGGAGGAAAACGCGCTTGTGTGCGAACCGAGGT
TCCATGGATCAAGCGTGCAAGTCCTCTCGAATTTGGTGCGCTTCATTCCGCGTGGATCCGACGGCCAGCCGGTCCTTGCT
CGCTACCTCGTGGAGTCCCGCGGGGAAGTTCTCATGGTCGTCAGGTTAGGCTCTGCGATTCAGTACGATCCGTCGGCGGA
GGAGTTCAGGGTGTTCGAGAGAAGAGATTTCAACGACGGCAAGTTCAACTGCATATGGAACTCGATGTCTGAGCTCGAAG
GCCGGATGCTGTTCGTCGGACGAGGCTGCTCAAGATCCTACGAGGCGGCCGATGGCCCCGCCATGGAGGGCGTCTACTTC
TTGGATGACCGGAGCTTCCGCGACCCGATCTTCCACGACCCCTACGAGCAGCCGATCTTCCGTCGCGCCAACCGTTGCAG
CGACAACGGCAAATGGTTGGAAGCGCCTTTCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4632.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis