Browse Element(s) Details


OsAffx.4810.1.S1_at

Description tigr:9634.m01198
TID=OsAffx.4810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1220011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed
LOC_Os06g12170Os.50577.1.A1_a_at11/116+6514580..6518178expressed protein
LOC_Os06g12170Os.20350.1.S1_at1/116+6514580..6518178expressed protein
LOC_Os06g12180NANA6+6520988..6522339Salt stress-induced protein, putative, expressed
LOC_Os06g12190NANA6+6533747..6534898Glutaredoxin family protein, expressed
LOC_Os06g12200OsAffx.4810.1.S1_at11/116+6536950..6537799hypothetical protein
LOC_Os06g12210Os.53254.1.S1_at1/116+6555803..6556320bHLH family protein, putative, expressed
LOC_Os06g12220Os.7811.1.S1_at11/116+6558755..6562367HVA22-like protein a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4810.1.S1_at--176--9731Chr06:6537619..6537643 (25 bp)
TCAATCGTGGTTACGGCCCAATCAG
LOC_Os06g12200
OsAffx.4810.1.S1_at--1059--3071Chr06:6537600..6537624 (25 bp)
AATCAGCCAGCGTTCATTTCTCCAA
LOC_Os06g12200
OsAffx.4810.1.S1_at--379--191Chr06:6537248..6537609 (25 bp)
ATTTCTCCAACATGCTGACCAATGC
LOC_Os06g12200
OsAffx.4810.1.S1_at--921--9051Chr06:6537226..6537250 (25 bp)
TGCGAGGTTGGACAATGAGCCTCTC
LOC_Os06g12200
OsAffx.4810.1.S1_at--34--2791Chr06:6537175..6537199 (25 bp)
AAGAGATGGCGATGGTTCCCATGGC
LOC_Os06g12200
OsAffx.4810.1.S1_at--311--8471Chr06:6537138..6537162 (25 bp)
TGGCTCCCACGGCATGGAAGCTTAG
LOC_Os06g12200
OsAffx.4810.1.S1_at--698--5391Chr06:6537122..6537146 (25 bp)
GAAGCTTAGCGATAGCATGCTCTTT
LOC_Os06g12200
OsAffx.4810.1.S1_at--458--291Chr06:6537111..6537135 (25 bp)
ATAGCATGCTCTTTGAGGCTCGCCG
LOC_Os06g12200
OsAffx.4810.1.S1_at--477--8931Chr06:6537082..6537106 (25 bp)
TGACGGTCGAAGTCTCAAAGAGCTT
LOC_Os06g12200
OsAffx.4810.1.S1_at--494--3291Chr06:6537067..6537091 (25 bp)
CAAAGAGCTTGTAGGTGGTGGCAAC
LOC_Os06g12200
OsAffx.4810.1.S1_at--919--5451Chr06:6537008..6537032 (25 bp)
GAACGGCAAAGCACGATGACAGGGT
LOC_Os06g12200
Target Sequence 
TCAATCGTGGTTACGGCCCAATCAGCCAGCGTTCATTTCTCCAACATGCTGACCAATGCGAGGTTGGACAATGAGCCTCT
CCGAGCTCGAGGAAGAGATAGGATAGAAAGAGATGGCGATGGTTCCCATGGCGGGGGTTCACCTTGGCTCCCACGGCATG
GAAGCTTAGCGATAGCATGCTCTTTGAGGCTCGCCGGGGATGACGGTCGAAGTCTCAAAGAGCTTGTAGGTGGTGGCAAC
GACATGGAGGTGGTCAACGGGGAGGACGAGCGCAGAACGGCAAAGCACGATGACAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis