Browse Element(s) Details


Os.50577.1.A1_a_at

Description gb:AK121923.1
DB_XREF= gi:37991546
TID=Os.50577.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106F12, full insert sequence.
FL= gb:AK121923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed
LOC_Os06g12170Os.50577.1.A1_a_at11/116+6514580..6518178expressed protein
LOC_Os06g12170Os.20350.1.S1_at1/116+6514580..6518178expressed protein
LOC_Os06g12180NANA6+6520988..6522339Salt stress-induced protein, putative, expressed
LOC_Os06g12190NANA6+6533747..6534898Glutaredoxin family protein, expressed
LOC_Os06g12200OsAffx.4810.1.S1_at11/116+6536950..6537799hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50577.1.A1_a_at--678--2771Chr06:6517587..6517611 (25 bp)
AAGAGTCGCTTTGCCGAGTCCAATG
LOC_Os06g12170
Os.50577.1.A1_a_at--688--9371Chr06:6517640..6517664 (25 bp)
TCGAGAAACACTTGCTACCACAGCT
LOC_Os06g12170
Os.50577.1.A1_a_at--737--9211Chr06:6517667..6517691 (25 bp)
TCCACCAATGCCACAGCTTACTGAT
LOC_Os06g12170
Os.50577.1.A1_a_at--1050--4891Chr06:6517682..6517706 (25 bp)
GCTTACTGATCCACATGCAATTCTG
LOC_Os06g12170
Os.50577.1.A1_a_at--1031--6191Chr06:6517719..6517743 (25 bp)
GAGGCAATCCCAATGACACCTGATC
LOC_Os06g12170
Os.50577.1.A1_a_at--282--8471Chr06:6517906..6517930 (25 bp)
TGGCGAACTGTCTGTGTGATGTGCA
LOC_Os06g12170
Os.50577.1.A1_a_at--479--7391Chr06:6517921..6517945 (25 bp)
GTGATGTGCACATGAACTTCTGTAT
LOC_Os06g12170
Os.50577.1.A1_a_at--145--5491Chr06:6517934..6517958 (25 bp)
GAACTTCTGTATGGCTGTGCACTCA
LOC_Os06g12170
Os.50577.1.A1_a_at--828--7331Chr06:6517950..6517974 (25 bp)
GTGCACTCATTTTGGCTTTGTGTTA
LOC_Os06g12170
Os.50577.1.A1_a_at--828--4831Chr06:6518104..6518128 (25 bp)
GCTCAACTAGTGTTACTGGAGTGTT
LOC_Os06g12170
Os.50577.1.A1_a_at--57--8031Chr06:6518121..6518145 (25 bp)
GGAGTGTTATCTTTAGCTGGACTAA
LOC_Os06g12170
Target Sequence 
AAGAGTCGCTTTGCCGAGTCCAATGATGAAATCGCTACTACGATGAAATCACTTCGAGAAACACTTGCTACCACAGCTCC
TCCACCAATGCCACAGCTTACTGATCCACATGCAATTCTGTGGCAGAAACTAGAGGCAATCCCAATGACACCTGATCAAA
GGGTTCTTGTTGGTGAGTATTTGTCTGACAAGGAGAATAAAGGTAAGCGTGGTTGGTTGTGCAATGCGAGTGATGCTACA
CTAAATGCTTGGGTGTTCAAGTTCTTATGTGAGAAAGATGGGCTTAACCTGTGAAGCATAGCTTGTTAAAGTAGTTTTTT
GGCGAACTGTCTGTGTGATGTGCACATGAACTTCTGTATGGCTGTGCACTCATTTTGGCTTTGTGTTATAAGGAATGATG
GCTAGAATATATGTATTAGTTGTTGGTTGTCTAATTTTAGCAGTGTGGTCATGACAAATGGCTAGAAAATGTCATTGAAA
TAGTTTTAGTTGGATGGTTGCTGATATTATTGTAATAGCTCAACTAGTGTTACTGGAGTGTTATCTTTAGCTGGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50577.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis