Browse Element(s) Details


Os.56273.1.S1_at

Description gb:AK109730.1
DB_XREF= gi:32994939
TID=Os.56273.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B12, full insert sequence.
FL= gb:AK109730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1215011/11Shikimate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed
LOC_Os06g12170Os.50577.1.A1_a_at11/116+6514580..6518178expressed protein
LOC_Os06g12170Os.20350.1.S1_at1/116+6514580..6518178expressed protein
LOC_Os06g12180NANA6+6520988..6522339Salt stress-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56273.1.S1_at--1001--5571Chr06:6495041..6495065 (25 bp)
GAAAGGTCTATCTGTCTGGCTGGAT
LOC_Os06g12150
Os.56273.1.S1_at--763--7991Chr06:6495020..6495044 (25 bp)
GGATGTGCCTTTGGATGCACTTGCA
LOC_Os06g12150
Os.56273.1.S1_at--505--10211Chr06:6494990..6495014 (25 bp)
TATTGCTCAAGTGGGTACTGCCTCT
LOC_Os06g12150
Os.56273.1.S1_at--1086--6111Chr06:6494947..6494966 (20 bp)
GAGTGATCCATACACAGCGGCCTTC
LOC_Os06g12150
Os.56273.1.S1_at--1010--5751Chr06:6494456..6494480 (25 bp)
GACGATGTCTCCAAACTAACACCGA
LOC_Os06g12150
Os.56273.1.S1_at--323--5831Chr06:6494312..6494457 (25 bp)
GACCGATATTGCTATTGAGGCCTTA
LOC_Os06g12150
Os.56273.1.S1_at--796--5951Chr06:6494278..6494302 (25 bp)
GAGAATTTCGTCACCGAGCATTCCA
LOC_Os06g12150
Os.56273.1.S1_at--349--5931Chr06:6494263..6494287 (25 bp)
GAGCATTCCACATCAAGTGGCCCAG
LOC_Os06g12150
Os.56273.1.S1_at--824--4431Chr06:6494197..6494221 (25 bp)
GCCTTGTAGAATTTTGCCCTCTTTT
LOC_Os06g12150
Os.56273.1.S1_at--513--6911Chr06:6494158..6494182 (25 bp)
GTATCCTGTATTTGTAGCATGTGCT
LOC_Os06g12150
Os.56273.1.S1_at--1044--5891Chr06:6494045..6494069 (25 bp)
GAGCTGACGCGAGATGTTCCACAAA
LOC_Os06g12150
Target Sequence 
GAAAGGTCTATCTGTCTGGCTGGATGTGCCTTTGGATGCACTTGCAAGGCGTATTGCTCAAGTGGGTACTGCCTCTCGTC
CTCTTCTGGATCAGCCATCGAGTGATCCATACACAGCGGCCTTCTCAAAACTCAGCATGCTTGCAGAGCAAAGAGGCGAT
GCTTATGCAAATGCTGATGCTCGAGTTTCTCTTGANAGAAATTGCANCTAAACAAGGCCATGACGATGTCTCCAAACTAA
CACCGACCGATATTGCTATTGAGGCCTTACTCAAGATTGAGAATTTCGTCACCGAGCATTCCACATCAAGTGGCCCAGTT
GGGGACTTAATAGTTGATTNCCCAGAATCNGAAGGACAAAGGCCTTGTAGAATTTTGCCCTCTTTTTTTCTTCTTTTGGT
GTATCCTGTATTTGTAGCATGTGCTGTTTAACATTATATTGATTTATTCTTTATATATCCAAAAGAGAGATAAGGCAAAG
CTTGTTCCCCTTGTAAAAATAGAATAACGAATGGAGCTGACGCGAGATGTTCCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis