Browse Element(s) Details

OsAffx.20128.2.S1_s_at

Description

tigr:9634.m01186
TID=OsAffx.20128.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g12090	11/11	GTP-binding protein SAR2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g12040	Os.27584.1.S1_at	11/11	6	+	6451850..6453455	mTERF family protein, expressed
LOC_Os06g12050	OsAffx.27578.1.S1_at	11/11	6	+	6457355..6458568	mTERF family protein, expressed
LOC_Os06g12060	Os.53799.1.S1_at	11/11	6	+	6460190..6464217	mTERF family protein, expressed
LOC_Os06g12060	Os.19956.1.S1_at	10/11	6	+	6460190..6464217	mTERF family protein, expressed
LOC_Os06g12060	Os.17014.1.S1_at	1/11	6	+	6460190..6464217	mTERF family protein, expressed
LOC_Os06g12070	OsAffx.4807.1.S1_at	11/11	6	+	6465718..6466994	mTERF family protein, expressed
LOC_Os06g12080	Os.8325.1.S1_at	11/11	6	+	6471172..6472673	mTERF family protein, expressed
LOC_Os06g12090	OsAffx.20128.2.S1_s_at	11/11	6	+	6474162..6478071	GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090	OsAffx.20128.1.S1_at	7/11	6	+	6474162..6478071	GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100	Os.47936.1.A1_at	11/11	6	+	6478284..6479981	mTERF family protein, expressed
LOC_Os06g12110	Os.5964.1.S1_at	11/11	6	+	6481367..6482824	mTERF family protein, expressed
LOC_Os06g12120	Os.17766.1.S1_at	11/11	6	+	6483044..6487554	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130	NA	NA	6	+	6490223..6490714	hypothetical protein
LOC_Os06g12140	OsAffx.4808.1.S1_at	10/11	6	+	6491885..6493715	hypothetical protein
LOC_Os06g12140	OsAffx.16999.1.S1_at	2/11	6	+	6491885..6493715	hypothetical protein
LOC_Os06g12150	Os.56273.1.S1_at	11/11	6	+	6494003..6496899	Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160	Os.18031.1.S1_at	11/11	6	+	6502744..6513200	AAA-type ATPase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0048221	biological_process	rough ER to cis-Golgi vesicle-mediated transport
GO:0000300	cellular_component	peripheral to membrane of membrane fraction
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005829	cellular_component	cytosol
GO:0005525	molecular_function	GTP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.20128.2.S1_s_at--420--957	1	Chr06:6474320..6474342 (23 bp)	TCTTCTACATGCTCTCACAAGAGAA	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--697--329	1	Chr06:6474335..6474761 (25 bp)	CACAAGAGAATCTGGCGGTGCACCA	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--297--345	1	Chr06:6477647..6477671 (25 bp)	CAGTAGTTTACGTGGTGGACGCTGC	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--493--211	1	Chr06:6477674..6477698 (25 bp)	ACAGGTGCCGGTTCGCCGAGTCGAA	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--57--429	1	Chr06:6477750..6477774 (25 bp)	CCTCGTCCTCGGGAACAAGATAGAC	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--334--323	1	Chr06:6477765..6477789 (25 bp)	CAAGATAGACATCCCGTACGCGGTG	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--668--917	1	Chr06:6477788..6477812 (25 bp)	TGCCCGAGCAGGAGCTGTGCTACTA	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--824--869	1	Chr06:6477803..6477827 (25 bp)	TGTGCTACTACCTCGGGCTCACCGG	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--1070--287	1	Chr06:6477841..6477865 (25 bp)	AAGGGCAATGTCAACCTTGCAGGAA	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--937--261	1	Chr06:6477853..6477877 (25 bp)	AACCTTGCAGGAACCGGAGTGCGGC	LOC_Os06g12090
OsAffx.20128.2.S1_s_at--563--425	1	Chr06:6477877..6477901 (25 bp)	CCGGTCGAGGTCTTCATGTGCAGCG	LOC_Os06g12090

Target Sequence

TCTTCTACATGCTCTCACAAGAGAATCTGGCGGTGCACCAGCCGACGCAGCACCCGACGTCGGAGGAGCTGAGCATCGGG
CGGATCAGGTTCAAGGCGTTCGACCTCGGCGGCCACCGGATCGCTCGCCGCGTCTGGAGGGACTACTACGCCCAGTTAAG
GAGGTTACCGCGGTATTTATATTACCGTACCCCCGCGGTAAGCCCGGTAACCGCGGTAACCCGCGGTAAGGTTGATGCAG
TAGTTTACGTGGTGGACGCTGCCGACAGGTGCCGGTTCGCCGAGTCGAAGATGGAGCTGGACGCCCTCCTGTCTGACGAC
GCGCTCGCTGGCGTGCCGTTCCTCGTCCTCGGGAACAAGATAGACATCCCGTACGCGGTGCCCGAGCAGGAGCTGTGCTA
CTACCTCGGGCTCACCGGCCTCACCACCGGCAAGGGCAATGTCAACCTTGCAGGAACCGGAGTGCGGCCGGTCGAGGTCT
TCATGTGCAGCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis