Browse Element(s) Details


OsAffx.4807.1.S1_at

Description tigr:9634.m01184
TID=OsAffx.4807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1207011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4807.1.S1_at--430--6691Chr06:6466251..6466275 (25 bp)
GTTCCACCGCGTGCTCAGTACAGTG
LOC_Os06g12070
OsAffx.4807.1.S1_at--933--5051Chr06:6466191..6466215 (25 bp)
GCAGCTGCTGGATGATCTTGGGTTT
LOC_Os06g12070
OsAffx.4807.1.S1_at--133--6131Chr06:6466137..6466161 (25 bp)
GAGGGCGCCACAAGTGCTGCGTTTA
LOC_Os06g12070
OsAffx.4807.1.S1_at--438--9931Chr06:6466099..6466123 (25 bp)
TACGGCGATCTGTTGAGTTCTTGAT
LOC_Os06g12070
OsAffx.4807.1.S1_at--484--7991Chr06:6466071..6466095 (25 bp)
GGATGTCGGTCTGGAGCAAAGCTAC
LOC_Os06g12070
OsAffx.4807.1.S1_at--962--4831Chr06:6466051..6466075 (25 bp)
GCTACATCGCACAAAGGCCAACGTT
LOC_Os06g12070
OsAffx.4807.1.S1_at--496--1871Chr06:6466031..6466055 (25 bp)
ACGTTGTTGGCGTATAGCCTTGAGC
LOC_Os06g12070
OsAffx.4807.1.S1_at--309--71Chr06:6465957..6465981 (25 bp)
ATTGCTGAACTGTGACTTGTCTTAC
LOC_Os06g12070
OsAffx.4807.1.S1_at--405--10811Chr06:6465941..6465965 (25 bp)
TTGTCTTACTACTGCATAGCCGCGA
LOC_Os06g12070
OsAffx.4807.1.S1_at--924--631Chr06:6465850..6465874 (25 bp)
ATGCTTATACCTCCAGTTGTTCTGG
LOC_Os06g12070
OsAffx.4807.1.S1_at--389--1231Chr06:6465813..6465837 (25 bp)
AGTTCGTTCATTGGTTTGCCTGTAG
LOC_Os06g12070
Target Sequence 
GTTCCACCGCGTGCTCAGTACAGTGGCTTTCTTAAGCAGGGAGACTATTGCCAGTAAAATGCAGCTGCTGGATGATCTTG
GGTTTTCGCAGGATGATTTCCTGGTAATCGTAAGGAGGGCGCCACAAGTGCTGCGTTTATCCGATGGAAGGATACGGCGA
TCTGTTGAGTTCTTGATAAGGGATGTCGGTCTGGAGCAAAGCTACATCGCACAAAGGCCAACGTTGTTGGCGTATAGCCT
TGAGCGGCGGTTGTTGCCTCGGCATTGCTTGCTCAAGGTCCTCAAGGCAAAGGGATTGCTGAACTGTGACTTGTCTTACT
ACTGCATAGCCGCGATGAGCGAGGAGAAGTTTGTGCAAAGGTTTGTGGATCCTTTTAAGGACAAAATTCAAGGCCTTGCT
GATGCTTATACCTCCAGTTGTTCTGGGGAAGCAAATGGAGTTCGTTCATTGGTTTGCCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis