Browse Element(s) Details


Os.8940.1.S1_at

Description gb:AK067986.1
DB_XREF= gi:32978004
TID=Os.8940.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122H21, full insert sequence.
FL= gb:AK067986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1203011/11Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8940.1.S1_at--450--7491Chr06:6441180..6441204 (25 bp)
GTGGGACCAAATCTGGACCTGCACT
LOC_Os06g12030
Os.8940.1.S1_at--259--5111Chr06:6441160..6441184 (25 bp)
GCACTTAGGTGTTACTCGCCAGGAA
LOC_Os06g12030
Os.8940.1.S1_at--390--5411Chr06:6441115..6441139 (25 bp)
GAAGCTGCACGTGATTTCCTAAGAA
LOC_Os06g12030
Os.8940.1.S1_at--949--6631Chr06:6441076..6441100 (25 bp)
GTTGATCCTGAAGCCAAGGTTGCAT
LOC_Os06g12030
Os.8940.1.S1_at--667--8171Chr06:6439751..6439775 (25 bp)
GGAACTACTTGCGAACACTCAACTG
LOC_Os06g12030
Os.8940.1.S1_at--792--6891Chr06:6439718..6439742 (25 bp)
GTATCAACCCTATGACTGGAGCTTA
LOC_Os06g12030
Os.8940.1.S1_at--435--10331Chr06:6439689..6439713 (25 bp)
TTTAGCTGCAGCCATGGTATTCACA
LOC_Os06g12030
Os.8940.1.S1_at--441--311Chr06:6439643..6439667 (25 bp)
ATACCTGTCACAGATACTCGTGGAA
LOC_Os06g12030
Os.8940.1.S1_at--313--1271Chr06:6439619..6439643 (25 bp)
AGATCACGACTTCTTTTACACCAGA
LOC_Os06g12030
Os.8940.1.S1_at--16--1191Chr06:6439536..6439560 (25 bp)
AGTACCAATCCAACTCTGTTCGATT
LOC_Os06g12030
Os.8940.1.S1_at--142--10811Chr06:6439487..6439511 (25 bp)
TTGTTTCTTTTGGACGTTCTCTGTT
LOC_Os06g12030
Target Sequence 
GTGGGACCAAATCTGGACCTGCACTTAGGTGTTACTCGCCAGGAAACATCGATAAAGAACTGGTGGAAGCTGCACGTGAT
TTCCTAAGAAATGTAGGAATTGTTGTTGATCCTGAAGCCAAGGTTGCATCTGTAAGCAAGATTTTGCGATGGTATAGCAC
AGACTTTGGTAAGAACGAGACGGAAGTGCTGAAGCATGCGGCAAATTATCTGGAACCAGCAGAGTCGGAGCAATTCTTGG
AACTACTTGCGAACACTCAACTGAAAGTCTTGTATCAACCCTATGACTGGAGCTTAAACATTTAGCTGCAGCCATGGTAT
TCACATAGATGTCTAGTTATACTTGAATACCTGTCACAGATACTCGTGGAAGATCACGACTTCTTTTACACCAGAATTTT
CCCAAGAGTTGGTCACAGCTCTGGATGCTGTTTTGTTGTGNCACAAAGAAATGAGTACCAATCCAACTCTGTTCGATTCA
CTGGACAAAATGTGTNCCTTCCTTGTTTCTTTTGGACGTTCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis