Browse Element(s) Details


Os.51139.1.A1_at

Description gb:AK061083.1
DB_XREF= gi:32971101
TID=Os.51139.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F10, full insert sequence.
FL= gb:AK061083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1202011/11NTGP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51139.1.A1_at--227--10711Chr06:6437335..6437359 (25 bp)
TTGTTGTGCGCAGAAGTCGACCCGA
LOC_Os06g12020
Os.51139.1.A1_at--801--3111Chr06:6438313..6438337 (25 bp)
AATATTGTGACGTCGATGCCAGCTG
LOC_Os06g12020
Os.51139.1.A1_at--67--6751Chr06:6438377..6438401 (25 bp)
GTTCATTTTAACAATCGTCGTCGAT
LOC_Os06g12020
Os.51139.1.A1_at--82--7211Chr06:6438393..6438417 (25 bp)
GTCGTCGATTCATGCACTTATTCTT
LOC_Os06g12020
Os.51139.1.A1_at--410--4431Chr06:6438459..6438483 (25 bp)
GCCATGTCCGCTTTGTTATGGTGAA
LOC_Os06g12020
Os.51139.1.A1_at--1068--5311Chr06:6438481..6438505 (25 bp)
GAAGTTTTCCTGTGACTTTTGTGAG
LOC_Os06g12020
Os.51139.1.A1_at--666--1931Chr06:6438567..6438591 (25 bp)
ACGGAGACCTGGATGCTTGCTGTGC
LOC_Os06g12020
Os.51139.1.A1_at--1073--10711Chr06:6438583..6438607 (25 bp)
TTGCTGTGCCGCTGTGATTTTAGAC
LOC_Os06g12020
Os.51139.1.A1_at--292--7611Chr06:6438621..6438645 (25 bp)
GGGAAACGAGATCTGCTGCTACTTT
LOC_Os06g12020
Os.51139.1.A1_at--648--9111Chr06:6438634..6438658 (25 bp)
TGCTGCTACTTTGCGTCTATACATA
LOC_Os06g12020
Os.51139.1.A1_at--706--111Chr06:6438692..6438716 (25 bp)
ATTCTCTCGGTTGCTGCTACTTATA
LOC_Os06g12020
Target Sequence 
TTGTTGTGCGCAGAAGTCGACCCGAGAGAAGGGTGAAGCAGCCGCCGAAAGCACGACCACCCGAGCGGATCGGATGTGGA
TGCACAATATTGTGACGTCGATGCCAGCTGCAATGTGTACATTGGTGCCCAAGTTCACAGCGATTACAAGTTCATTTTAA
CAATCGTCGTCGATTCATGCACTTATTCTTCGAAATTTAGGGAGAATTTGGTTAGCAGTTTTTAGCACTGGGCCATGTCC
GCTTTGTTATGGTGAAGTTTTCCTGTGACTTTTGTGAGTGTTCATAGGGGCCTCTCGGCCGTAAAACCTTTTGTGACGAG
TACAAGTGTGCAGGAGGCAACGGAGACCTGGATGCTTGCTGTGCCGCTGTGATTTTAGACGTGAGTAGGATAAGGGAAAC
GAGATCTGCTGCTACTTTGCGTCTATACATATGATATACTACTGGTAGTAAATGTCGAGATGCTATTCTCTCGGTTGCTG
CTACTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51139.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis