Browse Element(s) Details


OsAffx.27577.1.S1_at

Description tigr:9634.m01176
TID=OsAffx.27577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1201011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11990Os.7521.1.S1_at11/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_x_at9/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.7149.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.33974.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27577.1.S1_at--1105--8792Chr06:6423328..6423352 (25 bp)
TGTTCGTCGTGTCCTACCGTGGCTA
LOC_Os06g12010
OsAffx.27577.1.S1_at--442--9412Chr06:6423331..6423355 (25 bp)
TCGTCGTGTCCTACCGTGGCTACAG
LOC_Os06g12010
OsAffx.27577.1.S1_at--435--9252Chr06:6423339..6423363 (25 bp)
TCCTACCGTGGCTACAGCACCAAAA
LOC_Os06g12010
OsAffx.27577.1.S1_at--599--1472Chr06:6423354..6423375 (22 bp)
AGCACCAAAAACAACCCTGTCGTGT
LOC_Os06g12010
OsAffx.27577.1.S1_at--340--2412Chr06:6423360..6423716 (25 bp)
AAAAACAACCCTGTCGTGTCCAGCT
LOC_Os06g12010
OsAffx.27577.1.S1_at--735--8713Chr06:6423707..6423727 (21 bp)
TGTCGTGTCCAGCTCCTGTTGTGCA
LOC_Os06g12010
OsAffx.27577.1.S1_at--856--7453Chr06:6423707..6423731 (25 bp)
GTGTCCAGCTCCTGTTGTGCATGTG
LOC_Os06g12010
OsAffx.27577.1.S1_at--986--3393Chr06:6423712..6423736 (25 bp)
CAGCTCCTGTTGTGCATGTGCAGAG
LOC_Os06g12010
OsAffx.27577.1.S1_at--653--9271Chr06:6423716..6423740 (25 bp)
TCCTGTTGTGCATGTGCAGAGATAT
LOC_Os06g12010
OsAffx.27577.1.S1_at--807--5031Chr06:6423731..6423755 (25 bp)
GCAGAGATATGCATTGGTCAAGCAG
LOC_Os06g12010
OsAffx.27577.1.S1_at--794--7811Chr06:6423746..6423770 (25 bp)
GGTCAAGCAGGGTTCAGAGGGACAT
LOC_Os06g12010
Target Sequence 
TGTTCGTCGTGTCCTACCGTGGCTACAGCACCAAAAACAACCCTGTCGTGTCCAGCTCCTGTTGTGCATGTGCAGAGATA
TGCATTGGTCAAGCAGGGTTCAGAGGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis