Browse Element(s) Details


Os.7521.1.S1_at

Description gb:AK105686.1
DB_XREF= gi:32990895
TID=Os.7521.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B10, full insert sequence.
FL= gb:AK105686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1199011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11980Os.7831.1.S1_at8/116+6394404..6396222expressed protein
LOC_Os06g11990Os.7521.1.S1_at11/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_x_at9/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.7149.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.33974.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7521.1.S1_at--322--451Chr06:6400709..6400733 (25 bp)
ATCTACATAGTTAGGTTATCTGTGT
LOC_Os06g11990
Os.7521.1.S1_at--134--7891Chr06:6400696..6400720 (25 bp)
GGTTATCTGTGTAAGTTAAAATCCA
LOC_Os06g11990
Os.7521.1.S1_at--521--6011Chr06:6400662..6400686 (25 bp)
GAGAGAGTGTTCTTGTTTTCCATAC
LOC_Os06g11990
Os.7521.1.S1_at--183--3631Chr06:6400651..6400675 (25 bp)
CTTGTTTTCCATACTCTGCTATAAA
LOC_Os06g11990
Os.7521.1.S1_at--385--211Chr06:6400617..6400641 (25 bp)
ATTTGTGCATCAGTGTAAATAGCCT
LOC_Os06g11990
Os.7521.1.S1_at--195--411Chr06:6400609..6400633 (25 bp)
ATCAGTGTAAATAGCCTGCAGAGAA
LOC_Os06g11990
Os.7521.1.S1_at--637--4031Chr06:6400578..6400602 (25 bp)
CGTTTTGTTGTACCTTTCTGTGAGA
LOC_Os06g11990
Os.7521.1.S1_at--374--10791Chr06:6400574..6400598 (25 bp)
TTGTTGTACCTTTCTGTGAGATAAA
LOC_Os06g11990
Os.7521.1.S1_at--773--3431Chr06:6400543..6400567 (25 bp)
CAGATGAGTCATATTTTGTACTGAT
LOC_Os06g11990
Os.7521.1.S1_at--608--7731Chr06:6400471..6400495 (25 bp)
GGTGTAAATGCTTCCGCACTCCTAT
LOC_Os06g11990
Os.7521.1.S1_at--926--3011Chr06:6400465..6400489 (25 bp)
AATGCTTCCGCACTCCTATAAGCTG
LOC_Os06g11990
Target Sequence 
ATCTACATAGTTAGGTTATCTGTGTAAGTTAAAATCCATAAGAAGTTGAGAGAGTGTTCTTGTTTTCCATACTCTGCTAT
AAACGNTNNCCATATTTGTGCATCAGTGTAAATAGCCTGCAGAGAAATTTGNCGTTTTGTTGTACCTTTCTGTGAGATAA
AAGAGAACAGATGAGTCATATTTTGTACTGATTGTAATGAATTGATTCATTTTTTTCCNCGGGATTTTTATTTGTAAATG
GTGTAAATGCTTCCGCACTCCTATAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis