Browse Element(s) Details


Os.7149.1.S1_at

Description gb:AK105589.1
DB_XREF= gi:32990798
TID=Os.7149.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A05, full insert sequence.
FL= gb:AK105589.1 gb:AK121480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3606011/11expressed protein
LOC_Os06g119901/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36040Os.20191.1.S1_at10/1112+22055981..22058413Pollen allergen family protein, expressed
LOC_Os12g36050OsAffx.32049.1.S1_at11/1112+22064543..22066385hypothetical protein
LOC_Os12g36060Os.7149.1.S1_at11/1112+22067365..22068074expressed protein
LOC_Os12g36070OsAffx.32050.1.S1_at11/1112+22068496..22069308hypothetical protein
LOC_Os12g36084NANA12+22088476..22089137NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7149.1.S1_at--291--4811Chr12:22067644..22067668 (25 bp)
GCTCGGCGAGGCAAGGAAGGCCAGA
LOC_Os12g36060
Os.7149.1.S1_at--474--8211Chr12:22067708..22067732 (25 bp)
GGCCGGCGGCAGATAAACCCTCCCT
LOC_Os12g36060
Os.7149.1.S1_at--540--6171Chr12:22067907..22067931 (25 bp)
GAGGAGGCCACAGAGCTGTGTTTTT
LOC_Os12g36060
Os.7149.1.S1_at--660--3312Chr12:22067915..22067939 (25 bp)
CACAGAGCTGTGTTTTTTTATTTGT
LOC_Os12g36060
Os.7149.1.S1_at--237--8811Chr12:22067955..22067979 (25 bp)
TGTTGCAATGCAAATCGGTGTTGTG
LOC_Os12g36060
Os.7149.1.S1_at--588--10731Chr12:22067957..22067981 (25 bp)
TTGCAATGCAAATCGGTGTTGTGGG
LOC_Os12g36060
Os.7149.1.S1_at--149--6531Chr12:22067982..22068006 (25 bp)
GATTTGAATCCGCTGTATCTGTGTT
LOC_Os12g36060
Os.7149.1.S1_at--594--211Chr12:22067983..22068007 (25 bp)
ATTTGAATCCGCTGTATCTGTGTTC
LOC_Os12g36060
Os.7149.1.S1_at--1142--10731Chr12:22067985..22068009 (25 bp)
TTGAATCCGCTGTATCTGTGTTCAT
LOC_Os12g36060
Os.7149.1.S1_at--1106--8991Chr12:22067986..22068010 (25 bp)
TGAATCCGCTGTATCTGTGTTCATG
LOC_Os12g36060
Os.7149.1.S1_at--619--3893Chr12:22068000..22068024 (25 bp)
CTGTGTTCATGTATAGATTGTGTTG
LOC_Os12g36060
Target Sequence 
GCTCGGCGAGGCAAGGAAGGCCAGAGGCGGCTGCTCGGCGACGAGGGACGGCGCCGATGATGAGGGCCGGCGGCAGATAA
ACCCTCCCTCCCCGGTGTGGTCGTCCCCTCCCTCACTCCCTCTTCCTCTCAGATCTGCCCGGAGGGGGACGGGTGGAGGC
CGGCGGCCTCCCTTCCCTCTTTCCTCTCAGATCCGCCCGGTGGGGAGAGGCCACCGGCGGCAGCGGCATGGCCCTCCCCT
CTGCAGCAGTAGAGGGCGGCAGGGAGGAGGCCACAGAGCTGTGTTTTTTTATTTGTTTTTATTTTGATTGATGTTGCAAT
GCAAATCGGTGTTGTGGGGATTTGAATCCGCTGTATCTGTGTTCATGTATAGATTGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis