Browse Element(s) Details


OsAffx.32050.1.S1_at

Description tigr:9640.m03493
TID=OsAffx.32050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3607011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36040Os.20191.1.S1_at10/1112+22055981..22058413Pollen allergen family protein, expressed
LOC_Os12g36050OsAffx.32049.1.S1_at11/1112+22064543..22066385hypothetical protein
LOC_Os12g36060Os.7149.1.S1_at11/1112+22067365..22068074expressed protein
LOC_Os12g36070OsAffx.32050.1.S1_at11/1112+22068496..22069308hypothetical protein
LOC_Os12g36084NANA12+22088476..22089137NA
LOC_Os12g36100Os.52203.1.S1_at6/1112+22093425..22099482kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32050.1.S1_at--171--7171Chr12:22068537..22068561 (25 bp)
GTCTCCGTTGAGCGTTCCACGCGGC
LOC_Os12g36070
OsAffx.32050.1.S1_at--382--7491Chr12:22068633..22068657 (25 bp)
GTGGGAACTTTCTGTGGCTCGCGCA
LOC_Os12g36070
OsAffx.32050.1.S1_at--304--2531Chr12:22068638..22068662 (25 bp)
AACTTTCTGTGGCTCGCGCAATCAA
LOC_Os12g36070
OsAffx.32050.1.S1_at--962--3671Chr12:22068640..22068664 (25 bp)
CTTTCTGTGGCTCGCGCAATCAAGT
LOC_Os12g36070
OsAffx.32050.1.S1_at--1069--6791Chr12:22068663..22068687 (25 bp)
GTCGGCGGCGGACAAAAGGGCGACA
LOC_Os12g36070
OsAffx.32050.1.S1_at--841--2871Chr12:22068678..22068702 (25 bp)
AAGGGCGACAAGCACCAACGCCGAG
LOC_Os12g36070
OsAffx.32050.1.S1_at--278--4671Chr12:22068731..22068755 (25 bp)
GCGGGCCGCAGGAGCTGCTCTCCTT
LOC_Os12g36070
OsAffx.32050.1.S1_at--718--971Chr12:22068740..22068764 (25 bp)
AGGAGCTGCTCTCCTTGATCTCCCT
LOC_Os12g36070
OsAffx.32050.1.S1_at--507--5071Chr12:22068772..22068796 (25 bp)
GCAGCGCTGGCCAAAACACCCAAGG
LOC_Os12g36070
OsAffx.32050.1.S1_at--971--5931Chr12:22068798..22068819 (22 bp)
GAGCAGCGGCGAGCACACCACGATG
LOC_Os12g36070
OsAffx.32050.1.S1_at--378--1631Chr12:22068802..22069207 (25 bp)
AGCGGCGAGCACACCACGATGGACA
LOC_Os12g36070
Target Sequence 
GTCTCCGTTGAGCGTTCCACGCGGCCTCACCGCTTCCACTGCCTTCCTCCAGCTCCAGGGTGGCCGCGCCAAGCGGTGGC
ACCGGCGGAGGCGGAGGTGGGAACTTTCTGTGGCTCGCGCAATCAAGTCGGCGGCGGACAAAAGGGCGACAAGCACCAAC
GCCGAGCCGTACGCTCTGCTCTCCGCGATCTCCCGCGGGCCGCAGGAGCTGCTCTCCTTGATCTCCCTCATCGCGGCAGC
GCTGGCCAAAACACCCAAGGGGAGCAGCGGCGAGCACACCACGATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis