Browse Element(s) Details


OsAffx.32049.1.S1_at

Description tigr:9640.m03491
TID=OsAffx.32049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36040Os.20191.1.S1_at10/1112+22055981..22058413Pollen allergen family protein, expressed
LOC_Os12g36050OsAffx.32049.1.S1_at11/1112+22064543..22066385hypothetical protein
LOC_Os12g36060Os.7149.1.S1_at11/1112+22067365..22068074expressed protein
LOC_Os12g36070OsAffx.32050.1.S1_at11/1112+22068496..22069308hypothetical protein
LOC_Os12g36084NANA12+22088476..22089137NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32049.1.S1_at--488--2351Chr12:22064944..22064968 (25 bp)
AAAGCAGGGATGTCTCGAGGTCGTA
LOC_Os12g36050
OsAffx.32049.1.S1_at--871--31Chr12:22064981..22065004 (24 bp)
ATTGGTGGTATGTTCTTCTCTTTGA
LOC_Os12g36050
OsAffx.32049.1.S1_at--151--511Chr12:22065642..22065666 (25 bp)
ATCGATTCGATTAATCCCACCTGGG
LOC_Os12g36050
OsAffx.32049.1.S1_at--615--1771Chr12:22065660..22065684 (25 bp)
ACCTGGGCCACAACAATTGCTGTCA
LOC_Os12g36050
OsAffx.32049.1.S1_at--655--2451Chr12:22065671..22065695 (25 bp)
AACAATTGCTGTCACCGTCGGCGGT
LOC_Os12g36050
OsAffx.32049.1.S1_at--382--8511Chr12:22065695..22065719 (25 bp)
TGGCACCAATGGCATACTTCTCTTG
LOC_Os12g36050
OsAffx.32049.1.S1_at--1051--1351Chr12:22065727..22065751 (25 bp)
AGAGACACAATAGAATCCCGATGCA
LOC_Os12g36050
OsAffx.32049.1.S1_at--793--10831Chr12:22065785..22065809 (25 bp)
TTGGGACATCATACACATCATCAGT
LOC_Os12g36050
OsAffx.32049.1.S1_at--343--411Chr12:22065804..22065828 (25 bp)
ATCAGTCATCGTAAGATCGGAGTCA
LOC_Os12g36050
OsAffx.32049.1.S1_at--491--1171Chr12:22065824..22065936 (25 bp)
AGTCAAGCCGATTGGCGGTCAGGCC
LOC_Os12g36050
OsAffx.32049.1.S1_at--520--3971Chr12:22065927..22065951 (25 bp)
CGGTCAGGCCAACCTCATTGATAGA
LOC_Os12g36050
Target Sequence 
AAAGCAGGGATGTCTCGAGGTCGTAGTTTTTTCGTTTATTGGTGGTATGTTCTTCTCTTTGAATATCGATTCGATTAATC
CCACCTGGGCCACAACAATTGCTGTCACCGTCGGCGGTGGCACCAATGGCATACTTCTCTTGCCACCACAGAGACACAAT
AGAATCCCGATGCATATGGATGCAATAATGAAATGCAAGATTGACGATTGGGACATCATACACATCATCAGTCATCGTAA
GATCGGAGTCAAGCCGATTGGCGGTCAGGCCAACCTCATTGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis