Browse Element(s) Details


Os.20191.1.S1_at

Description gb:AY100692.1
DB_XREF= gi:25136292
GEN=EXPA26
TID=Os.20191.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20191 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26) mRNA, complete cds.
PROD=alpha expansin 26
FL= gb:AK071328.1 gb:AY100692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3604010/11Pollen allergen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36040Os.20191.1.S1_at10/1112+22055981..22058413Pollen allergen family protein, expressed
LOC_Os12g36050OsAffx.32049.1.S1_at11/1112+22064543..22066385hypothetical protein
LOC_Os12g36060Os.7149.1.S1_at11/1112+22067365..22068074expressed protein
LOC_Os12g36070OsAffx.32050.1.S1_at11/1112+22068496..22069308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20191.1.S1_at--312--4151Chr12:22056450..22056474 (25 bp)
CGCCGCCGCCAGTGAACGGGATGAA
LOC_Os12g36040
Os.20191.1.S1_at--754--9491NONE
TCTCCTACCGAAAGGTGGCGTGCGT
NONE
Os.20191.1.S1_at--349--4991Chr12:22057834..22057858 (25 bp)
GCAGGGCGGGATAAAGTACACGATA
LOC_Os12g36040
Os.20191.1.S1_at--343--7611Chr12:22057862..22057886 (25 bp)
GGGAACCCGTCGTACAACATGGTGA
LOC_Os12g36040
Os.20191.1.S1_at--860--1571Chr12:22057983..22058007 (25 bp)
AGCTCTGGAAGACGGAGGCCAACCT
LOC_Os12g36040
Os.20191.1.S1_at--832--6091Chr12:22058015..22058039 (25 bp)
GAGTCGCTCACCTTCCGGGTCATGA
LOC_Os12g36040
Os.20191.1.S1_at--394--4591Chr12:22058082..22058106 (25 bp)
GCGACTGGACCTACGACAACACCTA
LOC_Os12g36040
Os.20191.1.S1_at--299--1731Chr12:22058102..22058126 (25 bp)
ACCTACCAGGCCAAGAAGAACTTCT
LOC_Os12g36040
Os.20191.1.S1_at--577--5371Chr12:22058116..22058140 (25 bp)
GAAGAACTTCTAGCTGATCGATTTT
LOC_Os12g36040
Os.20191.1.S1_at--685--10171Chr12:22058157..22058181 (25 bp)
TATAATATTTTTACCTCTCCCTCCG
LOC_Os12g36040
Os.20191.1.S1_at--1010--4031Chr12:22058180..22058204 (25 bp)
CGTTCTCTCCCTACTTAATTGATGA
LOC_Os12g36040
Target Sequence 
CGCCGCCGCCAGTGAACGGGATGAAGGGCGAGCACTTCGACCTCACCATGCCGGCGTTCCTCTCCATCGCCGAGGAGAAG
CTCGGCGTCGTGCCCGTCTCCTACCGAAAGGTGGCGTGCGTGAGGCAGGGCGGGATAAAGTACACGATAACGGGGAACCC
GTCGTACAACATGGTGATGGTGAAGAACGTGGGCGGCGCGGGGGACGTGGTGAAGCTGACGGTGAAGGGGACCAAGCGGG
TGAAGTGGACGCCGCTGCAGCGCAGCTGGGGCCAGCTCTGGAAGACGGAGGCCAACCTCACCGGCGAGTCGCTCACCTTC
CGGGTCATGACCGGCGACCACCGCAAGGCCACCTCCTGGCGCGTCGCCCCCCGCGACTGGACCTACGACAACACCTACCA
GGCCAAGAAGAACTTCTAGCTGATCGATTTTTTTCAACTTATTTACTTATAATATTTTTACCTCTCCCTCCGTTCTCTCC
CTACTTAATTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis