Browse Element(s) Details


OsAffx.15379.2.S1_x_at

Description tigr:9631.m01923
TID=OsAffx.15379.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g119909/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11980Os.7831.1.S1_at8/116+6394404..6396222expressed protein
LOC_Os06g11990Os.7521.1.S1_at11/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_x_at9/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.7149.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.33974.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein
LOC_Os06g12010OsAffx.27577.1.S1_at11/116+6423295..6423809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15379.2.S1_x_at--1072--2492Chr03:10924496..10924520 (25 bp)
AACATGATTCCGCTATGGCTGCTTG
NONE
OsAffx.15379.2.S1_x_at--792--3632Chr03:10924517..10924541 (25 bp)
CTTGCTGTTTTTGCACGCCATGACA
NONE
OsAffx.15379.2.S1_x_at--702--271Chr03:10925072..10925096 (25 bp)
ATAGTCCTTGTGCACAATCATCACC
NONE
OsAffx.15379.2.S1_x_at--691--391Chr03:10925091..10925110 (20 bp)
ATCACCTGTGCATTTACACACGTGA
NONE
OsAffx.15379.2.S1_x_at--1124--8692Chr03:10925667..10925691 (25 bp)
TGTGCCTTACTTCTTGCTTTGCTAT
NONE
OsAffx.15379.2.S1_x_at--352--652Chr03:10925719..10925743 (25 bp)
ATGCAGCATTGCACTCAATTCCTGT
NONE
OsAffx.15379.2.S1_x_at--822--3152Chr03:10925735..10925759 (25 bp)
AATTCCTGTGCTCTCAAACTTGTTC
NONE
OsAffx.15379.2.S1_x_at--670--7012Chr03:10925789..10925813 (25 bp)
GTACTTTGCTGCACAAGCTTTGGCA
NONE
OsAffx.15379.2.S1_x_at--876--5032Chr03:10925833..10925857 (25 bp)
GCAGAGGAACTCTTCTTGCTGTTGC
NONE
OsAffx.15379.2.S1_x_at--346--4412Chr03:10925871..10925895 (25 bp)
GCCACTGGACTTATTTCTTTGCTTG
NONE
OsAffx.15379.2.S1_x_at--942--6732Chr03:10925942..10925966 (25 bp)
GTTCATGTTGGTTCCTAATCCTGAT
NONE
Target Sequence 
AACATGATTCCGCTATGGCTGCTTGCTGTTTTTGCACGCCATGACAGCAAAACAAGGGCTGAAATTCTAGAAGCTGGAGC
AGTCGAAATGCTTATGGAGAAGATTTCTCAAAATGCATTCCTATATGTGATTGAAGTCTCAAGGATTAATATAGTCCTTG
TGCACAATCATCACCTGTGCATTTACACACGTGAAGAAGATAGCACTGCATGGGTCTGTGCCTTACTTCTTGCTTTGCTA
TTTCAAGAAAGGGAGATAAATCGATCTAATGCAGCATTGCACTCAATTCCTGTGCTCTCAAACTTGTTCAGGTCAGATGA
ACAAGCATACAGATACAGGTACTTTGCTGCACAAGCTTTGGCAAGTCTGGTTTGCAACGGTAGCAGAGGAACTCTTCTTG
CTGTTGCTAATTCTGGGGCGGCCACTGGACTTATTTCTTTGCTTGGATGTGCTGAGGTTGATATAGCTGATCTTTTGGAA
TTATCAGAGGAGTTCATGTTGGTTCCTAATCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15379.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis