Browse Element(s) Details


Os.53799.1.S1_at

Description gb:AK100116.1
DB_XREF= gi:32985325
TID=Os.53799.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007D12, full insert sequence.
FL= gb:AK100116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1206011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53799.1.S1_at--308--711Chr06:6460746..6460770 (25 bp)
ATGATGTTTCGGTGATCTTCAGGAA
LOC_Os06g12060
Os.53799.1.S1_at--1088--7831Chr06:6460638..6460662 (25 bp)
GGTACATTGCGCGAAGGCCGGTATT
LOC_Os06g12060
Os.53799.1.S1_at--666--4471Chr06:6460622..6460646 (25 bp)
GCCGGTATTGCTCTTGTATAGCCTT
LOC_Os06g12060
Os.53799.1.S1_at--112--91Chr06:6460586..6460610 (25 bp)
ATTGCCTCGGTATTACTTGCTCAAG
LOC_Os06g12060
Os.53799.1.S1_at--237--7931Chr06:6460538..6460562 (25 bp)
GGATTGCAAGCTGTGTTACTACTCA
LOC_Os06g12060
Os.53799.1.S1_at--688--6771Chr06:6460524..6460548 (25 bp)
GTTACTACTCAACAGCCGCACTGGG
LOC_Os06g12060
Os.53799.1.S1_at--35--712Chr06:6463085..6463109 (25 bp)
ATGAGGACCACATTGCAGGCCTTGC
LOC_Os06g12060
Os.53799.1.S1_at--226--10431Chr06:6460433..6460457 (25 bp)
TTATGGCTCTATTTGTTCCGGGAAA
LOC_Os06g12060
Os.53799.1.S1_at--1044--9231Chr06:6460391..6460415 (25 bp)
TCCATTGCTTGGTTTGTAGACTGAA
LOC_Os06g12060
Os.53799.1.S1_at--409--6551Chr06:6460338..6460362 (25 bp)
GATTTTGGCTAGATCGTCGCACAGG
LOC_Os06g12060
Os.53799.1.S1_at--336--8111Chr06:6460291..6460315 (25 bp)
GGACCCTTGGATCATCTTGTACTAT
LOC_Os06g12060
Target Sequence 
ATGATGTTTCGGTGATCTTCAGGAAGATGCCATCCTTCCTGACCGCATCCGAGAAAAGGATACGGCGAGCCGTGGGGTTC
TTGAAGGGGGATGTTGGTCTGGAGGAACGGTACATTGCGCGAAGGCCGGTATTGCTCTTGTATAGCCTTGAACGGCGGCT
ATTGCCTCGGTATTACTTGCTCAAGGTCCTCAGGACAAAGGGATTGCTGGATTGCAAGCTGTGTTACTACTCAACAGCCG
CACTGGGCGAGAAGAAGTTTATAGAAAGGTTTGTGCATCCTTATGAGGACCACATTGCAGGCCTTGCTGATGCTTATGGC
TCTATTTGTTCCGGGAAAGTAGCAAATGGAGTTGCTCCATTGCTTGGTTTGTAGACTGAAATTGACGGATGTAAAAGTTT
CTGCTGGGGATTTTGGCTAGATCGTCGCACAGGAATGCAAAATATTAAGGTTTGTGGACCCTTGGATCATCTTGTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis