Browse Element(s) Details


Os.27584.1.S1_at

Description gb:AK103852.1
DB_XREF= gi:32989061
TID=Os.27584.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148L16, full insert sequence.
FL= gb:AK103852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1204011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12020Os.51139.1.A1_at11/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12020OsAffx.14668.1.S1_at1/116+6434825..6438820NTGP5, putative, expressed
LOC_Os06g12030Os.8940.1.S1_at11/116+6439429..6446607Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os06g12040Os.27584.1.S1_at11/116+6451850..6453455mTERF family protein, expressed
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27584.1.S1_at--745--5291Chr06:6452391..6452415 (25 bp)
GAAGGCCTGCACTCACGATGTATAG
LOC_Os06g12040
Os.27584.1.S1_at--53--10731Chr06:6452308..6452332 (25 bp)
TTGCTCAAGGCCAATTATGACTTCT
LOC_Os06g12040
Os.27584.1.S1_at--797--8951Chr06:6452291..6452315 (25 bp)
TGACTTCTATAATATCTCTGTGATT
LOC_Os06g12040
Os.27584.1.S1_at--677--6591Chr06:6452162..6452186 (25 bp)
GTTGAAGCTGCTCTCAAAGCGTAAG
LOC_Os06g12040
Os.27584.1.S1_at--493--6571Chr06:6452068..6452092 (25 bp)
GATTCATTCACTTCAGGAGCCAAAT
LOC_Os06g12040
Os.27584.1.S1_at--427--4391Chr06:6452050..6452074 (25 bp)
GCCAAATGAAATTGGGCTTTGCTCT
LOC_Os06g12040
Os.27584.1.S1_at--1144--4871Chr06:6452035..6452059 (25 bp)
GCTTTGCTCTCAACAAGCCAAACTA
LOC_Os06g12040
Os.27584.1.S1_at--997--5891Chr06:6451926..6451950 (25 bp)
GAGCTGACATATTTTGTAGCACTAA
LOC_Os06g12040
Os.27584.1.S1_at--81--8771Chr06:6451912..6451936 (25 bp)
TGTAGCACTAAGTCGATCGAATTGC
LOC_Os06g12040
Os.27584.1.S1_at--481--6391Chr06:6451898..6451922 (25 bp)
GATCGAATTGCTATAGACTTTTGTC
LOC_Os06g12040
Os.27584.1.S1_at--982--5691Chr06:6451883..6451907 (25 bp)
GACTTTTGTCACTGTTGCTTGGATT
LOC_Os06g12040
Target Sequence 
GAAGGCCTGCACTCACGATGTATAGCATTGAGCGCCGGTTGTTNCCACGGCATTGCTTGATCAATGTTCTCAAGGGGAAC
GGATTGCTCAAGGCCAATTATGACTTCTATAATATCTCTGTGATTAGCAACGATGATTTCATGGAAAAATTCNTGCANCC
ATATGTGGAGAGTGTTCCAGGCCTTGGTGATGCATATGCTTNTAGCTGTACTGGATGTGGAGTGCNCCAGTTGAAGCTGC
TCTCAAAGCGTAAGACAAAGNGCNGANTGTTTNTTNTAGTAANACCAGCAAGTTNGGACAATTTTAAGGTTAGTTTATCN
CTTTGATTCATTCACTTCAGGAGCCAAATGAAATTGGGCTTTGCTCTCAACAAGCCAAACTAAGATTTGGTCTTGATTAA
TGGNGTCNCTATGCCATTCAAAGACTGAACTTTNTATTAAATGGATTAGATGAATCTTAATGGATTGAGCTGACATATTT
TGTAGCACTAAGTCGATCGAATTGCTATAGACTTTTGTCACTGTTGCTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis