Browse Element(s) Details


Os.5964.1.S1_at

Description gb:AK067095.1
DB_XREF= gi:32977113
TID=Os.5964.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096A05, full insert sequence.
FL= gb:AK104692.1 gb:AK067095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1211011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12050OsAffx.27578.1.S1_at11/116+6457355..6458568mTERF family protein, expressed
LOC_Os06g12060Os.53799.1.S1_at11/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.19956.1.S1_at10/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12060Os.17014.1.S1_at1/116+6460190..6464217mTERF family protein, expressed
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5964.1.S1_at--845--8831Chr06:6482243..6482267 (25 bp)
TGATCATCAGGAAGGCACCGCAGTT
LOC_Os06g12110
Os.5964.1.S1_at--27--10711Chr06:6482345..6482369 (25 bp)
TTGCGCATAGGCCAGTGTTGTTTTT
LOC_Os06g12110
Os.5964.1.S1_at--815--10771Chr06:6482362..6482386 (25 bp)
TTGTTTTTGTACAGCCTTGAGCGGC
LOC_Os06g12110
Os.5964.1.S1_at--391--9691Chr06:6482403..6482427 (25 bp)
TCACTTGCTCAAGGTTCTCAGGATG
LOC_Os06g12110
Os.5964.1.S1_at--281--8571Chr06:6482450..6482474 (25 bp)
TGGATTACTACAACACAGCCGCGAT
LOC_Os06g12110
Os.5964.1.S1_at--1062--7971Chr06:6482505..6482529 (25 bp)
GGATCCTTACAAGTGCCACATTCCA
LOC_Os06g12110
Os.5964.1.S1_at--925--631Chr06:6482540..6482564 (25 bp)
ATGCTTATACGTCCAGTTGTGCCGG
LOC_Os06g12110
Os.5964.1.S1_at--453--6671Chr06:6482581..6482605 (25 bp)
GTTGCTTCACTGCTTGGTGTGTAGA
LOC_Os06g12110
Os.5964.1.S1_at--574--5211Chr06:6482637..6482661 (25 bp)
GAATTCGGCTCAATTACTGCGGAAG
LOC_Os06g12110
Os.5964.1.S1_at--1038--3211Chr06:6482666..6482690 (25 bp)
CAAGATATTACGGTTTGTCCCCTGT
LOC_Os06g12110
Os.5964.1.S1_at--30--7031Chr06:6482751..6482775 (25 bp)
GTACTTGTTGCATCTTGTAGCTCTG
LOC_Os06g12110
Target Sequence 
TGATCATCAGGAAGGCACCGCAGTTGGTGGCCTCATCGGAGGAAAAGATACGGCAAGCCGCTGAATTCTTGAAGAGGGAT
GTTGGTTTGGAGGGACGGTACATTGCGCATAGGCCAGTGTTGTTTTTGTACAGCCTTGAGCGGCGATTGTTGCCTCNGCA
TCACTTGCTCAAGGTTCTCAGGATGAAGGGATTGCTGGATTGTGAGTTGGATTACTACAACACAGCCGCGATGAGTGAGA
GGAAGTTTGTGCGGAAGTTTGTGGATCCTTACAAGTGCCACATTCCAGGCCTCGCTGATGCTTATACGTCCAGTTGTGCC
GGGGAAACAGCAAATGGAGTTGCTTCACTGCTTGGTGTGTAGACAGAAATGGATTATGCGCTACAGTTTGTGGAGAATTC
GGCTCAATTACTGCGGAAGAATGCAAGATATTACGGTTTGTCCCCTGTTACTTCATTTTGTAATGTCTAATGTTGACTCT
TCTGGTGAAAAAGCATGTAGGTTGTTTGGTACTTGTTGCATCTTGTAGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis