Browse Element(s) Details


OsAffx.4808.1.S1_at

Description tigr:9634.m01192
TID=OsAffx.4808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1214010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12070OsAffx.4807.1.S1_at11/116+6465718..6466994mTERF family protein, expressed
LOC_Os06g12080Os.8325.1.S1_at11/116+6471172..6472673mTERF family protein, expressed
LOC_Os06g12090OsAffx.20128.2.S1_s_at11/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12090OsAffx.20128.1.S1_at7/116+6474162..6478071GTP-binding protein SAR2, putative, expressed
LOC_Os06g12100Os.47936.1.A1_at11/116+6478284..6479981mTERF family protein, expressed
LOC_Os06g12110Os.5964.1.S1_at11/116+6481367..6482824mTERF family protein, expressed
LOC_Os06g12120Os.17766.1.S1_at11/116+6483044..6487554BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g12130NANA6+6490223..6490714hypothetical protein
LOC_Os06g12140OsAffx.4808.1.S1_at10/116+6491885..6493715hypothetical protein
LOC_Os06g12140OsAffx.16999.1.S1_at2/116+6491885..6493715hypothetical protein
LOC_Os06g12150Os.56273.1.S1_at11/116+6494003..6496899Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os06g12160Os.18031.1.S1_at11/116+6502744..6513200AAA-type ATPase family protein, putative, expressed
LOC_Os06g12170Os.50577.1.A1_a_at11/116+6514580..6518178expressed protein
LOC_Os06g12170Os.20350.1.S1_at1/116+6514580..6518178expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4808.1.S1_at--976--9511Chr06:6491921..6491945 (25 bp)
TCTCTCTATCACAGTCTTCTCTTCT
LOC_Os06g12140
OsAffx.4808.1.S1_at--571--1851Chr06:6491993..6492017 (25 bp)
ACGACACGGGAGGATTGCTCCTCCA
LOC_Os06g12140
OsAffx.4808.1.S1_at--881--9631Chr06:6492105..6492129 (25 bp)
TCAGGTTGGTGCTCCGCTGCTGCAG
LOC_Os06g12140
OsAffx.4808.1.S1_at--961--9271Chr06:6492186..6492210 (25 bp)
TCCGTCTTGCTAAACGCCGGCGAGG
LOC_Os06g12140
OsAffx.4808.1.S1_at--717--5631Chr06:6493297..6493316 (20 bp)
GACACGGACCTATTCGGCTGGCATT
LOC_Os06g12140
OsAffx.4808.1.S1_at--778--5831Chr06:6493298..6493322 (25 bp)
GACCTATTCGGCTGGCATTTTTCGC
LOC_Os06g12140
OsAffx.4808.1.S1_at--804--8491Chr06:6493310..6493334 (25 bp)
TGGCATTTTTCGCAGCAAGCTGCAG
LOC_Os06g12140
OsAffx.4808.1.S1_at--200--3251Chr06:6493325..6493349 (25 bp)
CAAGCTGCAGCTAACTGCCATGCAG
LOC_Os06g12140
OsAffx.4808.1.S1_at--470--9191Chr06:6493340..6493364 (25 bp)
TGCCATGCAGCTGAGCATGCTGCTT
LOC_Os06g12140
OsAffx.4808.1.S1_at--543--5291Chr06:6493392..6493415 (24 bp)
GAATGGCGGCCGAACATGCCAACGT
LOC_Os06g12140
OsAffx.4808.1.S1_at--660--5491NONE
GAACATGCCAACGTGTATGGTGAGA
NONE
Target Sequence 
TCTCTCTATCACAGTCTTCTCTTCTCTGTTCTCTGGGCAAGCCGGCCGACGGCTGGGGAGGAGGTGGCTACGACGACACG
GGAGGATTGCTCCTCCACCGCGGCCTGGTCGCCCCATAGCCTCCTCAGCACAGTCTGCCATGGCATCGGCCTCGTCGGAG
GCGAGCGAGGCGCGCGCATCCCGCTCAGGTTGGTGCTCCGCTGCTGCAGTCTCTCCCGTGCCTGGGCCGCCGCGCTCTCC
TCCGACGCCTTCATCGACCACTACCTCCGTCTTGCTAAACGCCGGCGAGGTCCCAAGCTTTGCATCCTGCCGGAATCGGC
GTTCGCCGACACGGACCTATTCGGCTGGCATTTTTCGCAGCAAGCTGCAGCTAACTGCCATGCAGCTGAGCATGCTGCTT
GCTGCTGCAGCCGCAGCGCTGCCGTGGGAATGGCGGCCGAACATGCCAACGTGTATGGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis