Browse Element(s) Details


OsAffx.4847.1.S1_at

Description tigr:9634.m01580
TID=OsAffx.4847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1574010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15700Os.19036.1.S1_at11/116+8890134..8902219expressed protein
LOC_Os06g15710NANA6+8903525..8903881retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15720NANA6+8908222..8908679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15730Os.50213.1.S1_at11/116+8912932..8916865expressed protein
LOC_Os06g15740OsAffx.4847.1.S1_at10/116+8924129..8929445hypothetical protein
LOC_Os06g15750OsAffx.15443.1.S1_at11/116+8934093..8938019NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4847.1.S1_at--374--6731Chr06:8929332..8929356 (25 bp)
GTTCTCTGCCACAGTCAATCTATTT
LOC_Os06g15740
OsAffx.4847.1.S1_at--444--151Chr06:8928706..8928730 (25 bp)
ATTATGGTAGTGTCCAGACTCGTGA
LOC_Os06g15740
OsAffx.4847.1.S1_at--374--6751Chr06:8928455..8928655 (25 bp)
GTTCATGCTGATTTAGGAGCTTCAC
LOC_Os06g15740
OsAffx.4847.1.S1_at--167--3971Chr06:8925245..8925269 (25 bp)
CGGTCCTCAACTCCGGTGACAAGTT
LOC_Os06g15740
OsAffx.4847.1.S1_at--312--6751Chr06:8925216..8925237 (22 bp)
GTTCAGGGTCACGACACACAGGCGA
LOC_Os06g15740
OsAffx.4847.1.S1_at--1091--2091Chr06:8925113..8925136 (24 bp)
ACAGGCGAATATGATGTCCTCCTCC
LOC_Os06g15740
OsAffx.4847.1.S1_at--933--4431Chr06:8925081..8925105 (25 bp)
GCCATAGTCACCATCTTGTATGCGT
LOC_Os06g15740
OsAffx.4847.1.S1_at--608--6031Chr06:8925034..8925058 (25 bp)
GAGATGCCCTGGATCAGCGGCAAAG
LOC_Os06g15740
OsAffx.4847.1.S1_at--211--8871Chr06:8924996..8925020 (25 bp)
TGATGAAGCAGTGCAGCGGTCTCCG
LOC_Os06g15740
OsAffx.4847.1.S1_at--122--1591Chr06:8924914..8924938 (25 bp)
AGCTCGTGGCAGAGCGACGCTAGAT
LOC_Os06g15740
OsAffx.4847.1.S1_at--489--1291NONE
AGATCCGGACCGCTTCTAGCAGAAG
NONE
Target Sequence 
GTTCTCTGCCACAGTCAATCTATTTTTTGATATATATGAGATCATTATGGTAGTGTCCAGACTCGTGAAATTACAAGTGA
AAATATCCAAACTGAATGAAGTTTGTTTTGCTATAAGTGTTCATGCTGATTTAGGAGCTTCACAATTGATTGATCAAGAT
CAGCGGGATGCCTCACCCGGCCCCCGTAGTCCATCAATCCTGCCCACAGGCAAGGCGGTCCTCAACTCCGGTGACAAGTT
CGCCGGCGTTCAGGGTCACGACACACAGGCGAATATGATGTCCTCCTCCACCGCTCGCCATAGTCACCATCTTGTATGCG
TGTGGAGCAGGTGCAGGATGTGGGAGATGCCCTGGATCAGCGGCAAAGACGAGGTGCTCGATGATGAAGCAGTGCAGCGG
TCTCCGGGCTCCGACTGCTCCGGCAGTCACCGGCGGAGGTCGGAGACGGAAACGATGCAGAGAAGCTCGTGGCAGAGCGA
CGCTAGATCCGGACCGCTTCTAGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis