Browse Element(s) Details


OsAffx.4897.1.S1_at

Description tigr:9634.m02161
TID=OsAffx.4897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2205011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22040OsAffx.17778.2.S1_at11/116+12772279..12773486hypothetical protein
LOC_Os06g22040OsAffx.6537.1.S1_at2/116+12772279..12773486hypothetical protein
LOC_Os06g22050OsAffx.4897.1.S1_at11/116+12780812..12781501hypothetical protein
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4897.1.S1_at--153--1951Chr06:12781386..12781410 (25 bp)
ACGGCCGGGTTCAGGTGCAGAGCTT
LOC_Os06g22050
OsAffx.4897.1.S1_at--1050--9391Chr06:12781321..12781345 (25 bp)
TCGTACAATGCGACCAGCGTGGCCG
LOC_Os06g22050
OsAffx.4897.1.S1_at--258--9851Chr06:12781318..12781342 (25 bp)
TACAATGCGACCAGCGTGGCCGGCC
LOC_Os06g22050
OsAffx.4897.1.S1_at--58--8391Chr06:12781030..12781054 (25 bp)
GGCGAGGGTCGCAAGGGCATAAGGA
LOC_Os06g22050
OsAffx.4897.1.S1_at--178--8351Chr06:12780951..12780975 (25 bp)
GGCGGCCAAGCTACAGCTCGAGCCT
LOC_Os06g22050
OsAffx.4897.1.S1_at--685--8451Chr06:12780948..12780972 (25 bp)
GGCCAAGCTACAGCTCGAGCCTGTA
LOC_Os06g22050
OsAffx.4897.1.S1_at--57--2711Chr06:12780944..12780968 (25 bp)
AAGCTACAGCTCGAGCCTGTACCGG
LOC_Os06g22050
OsAffx.4897.1.S1_at--282--4851Chr06:12780942..12780966 (25 bp)
GCTACAGCTCGAGCCTGTACCGGGT
LOC_Os06g22050
OsAffx.4897.1.S1_at--309--4731Chr06:12780866..12780890 (25 bp)
GCTGGTGTGCCCGATGCAGTGCGAG
LOC_Os06g22050
OsAffx.4897.1.S1_at--496--6332Chr05:16782879..16782903 (25 bp)
GATGCAGTGCGAGGGCCCCTGCTTC
NONE
OsAffx.4897.1.S1_at--578--1092Chr05:16782890..16782914 (25 bp)
AGGGCCCCTGCTTCTACGACTGCGA
NONE
Target Sequence 
ACGGCCGGGTTCAGGTGCAGAGCTTGGAGCGGCCGGTTGGTGGTGGCGGCGGCGGCAATGGCACGTCGTACAATGCGACC
AGCGTGGCCGGCCGGAAGGATGGTGGCGGTGGCGGTGGTGGAGGAGGGGGAAGCAGTGGTGGGAGTTCTTGGAGCTATGG
ATGGGGGTGGGGCTGGGGCACTGACAGCGGCGGCGGTGGAAGCAGTGGCGGCGGCGGAGGAGGAGGAGGGGGAGGTGGTG
GCGGTGGTGGAGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAAGAAGGTGCTGGTGGGGATGCGGCAATGGTAGA
CGGCGCCACAAAGGTGGCAAAGAAGGCGGCGGCGGCGGCGAGGGTCGCAAGGGCATAAGGACGGAGCGGGAGAGGGAGGG
CGTCGGCGGTGGTGGCGCGGGGAGGAGGCACGGGCGGCGGCCAAGCTACAGCTCGAGCCTGTACCGGGTGGGGGAGTACG
CGCGGTGCACGGCGGCGACGGGGCGGTGCCGAGGGGCGCTGCTGGTGTGCCCGATGCAGTGCGAGGGCCCCTGCTTCTAC
GACTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis