Browse Element(s) Details


OsAffx.4953.1.S1_at

Description tigr:9634.m02738
TID=OsAffx.4953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2863011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein
LOC_Os06g28610NANA6+16278723..16279220hypothetical protein
LOC_Os06g28620NANA6+16281070..16281570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28630OsAffx.4953.1.S1_at11/116+16301036..16304077expressed protein
LOC_Os06g28630Os.12606.1.S1_at10/116+16301036..16304077expressed protein
LOC_Os06g28639NANA6+16307991..16308169NA
LOC_Os06g28648NANA6+16316198..16316691NA
LOC_Os06g28660NANA6+16320280..16326031retrotransposon protein, putative, unclassified
LOC_Os06g28670OsAffx.4954.1.S1_x_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28670OsAffx.4954.1.S1_at11/116+16328397..16330326Polygalacturonase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4953.1.S1_at--121--8151Chr06:16301186..16301210 (25 bp)
GGACACGCCGGACCGCTGGGAAAAT
LOC_Os06g28630
OsAffx.4953.1.S1_at--939--2151Chr06:16301238..16301262 (25 bp)
ACAGCGGATGATGCGAAGAGGCACT
LOC_Os06g28630
OsAffx.4953.1.S1_at--282--5351Chr06:16301252..16301276 (25 bp)
GAAGAGGCACTATAAGAAGCTGGAA
LOC_Os06g28630
OsAffx.4953.1.S1_at--68--1611Chr06:16301269..16301293 (25 bp)
AGCTGGAAAATGACATCGGCCGCAT
LOC_Os06g28630
OsAffx.4953.1.S1_at--904--2091Chr06:16301281..16301305 (25 bp)
ACATCGGCCGCATTGATTCAACAGG
LOC_Os06g28630
OsAffx.4953.1.S1_at--615--51Chr06:16301292..16301316 (25 bp)
ATTGATTCAACAGGTGCCAGCAGCA
LOC_Os06g28630
OsAffx.4953.1.S1_at--877--5051Chr06:16301311..16301335 (25 bp)
GCAGCAGCAACTCCAATGGCCGTAG
LOC_Os06g28630
OsAffx.4953.1.S1_at--616--1991Chr06:16301320..16301344 (25 bp)
ACTCCAATGGCCGTAGCAGCAGTGA
LOC_Os06g28630
OsAffx.4953.1.S1_at--724--10191Chr06:16301826..16301850 (25 bp)
TATATTATCACTTGGCTTGGCTTCT
LOC_Os06g28630
OsAffx.4953.1.S1_at--80--10551Chr06:16301847..16301871 (25 bp)
TTCTTCACCTTTATCTCGAAAGGAC
LOC_Os06g28630
OsAffx.4953.1.S1_at--983--10331Chr06:16301856..16301880 (25 bp)
TTTATCTCGAAAGGACTGCAAACTT
LOC_Os06g28630
Target Sequence 
GGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATA
AGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGAG
GGGCAGAGTTTTAGTGGAAAATATATATTATCACTTGGCTTGGCTTCTTCACCTTTATCTCGAAAGGACTGCAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis