Browse Element(s) Details


OsAffx.4964.1.S1_at

Description tigr:9634.m02858
TID=OsAffx.4964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2978010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29750NANA6+17081882..17084807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29760Os.10703.2.S1_x_at1/116+17085123..17091233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29770OsAffx.15669.1.S1_at10/116+17103032..17104994hypothetical protein
LOC_Os06g29780OsAffx.4964.1.S1_at10/116+17106336..17107478hypothetical protein
LOC_Os06g29790Os.52435.1.S1_at10/116+17129112..17133976EXS family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4964.1.S1_at--338--8411Chr06:17106413..17106437 (25 bp)
GGCCCAAACTAAGTTGACATCGAGT
LOC_Os06g29780
OsAffx.4964.1.S1_at--173--5671Chr06:17106428..17106452 (25 bp)
GACATCGAGTATGTTTCGGAGTCCA
LOC_Os06g29780
OsAffx.4964.1.S1_at--896--9851Chr06:17106462..17106486 (25 bp)
TACACTAAAATGGTCGCTCAGGTCG
LOC_Os06g29780
OsAffx.4964.1.S1_at--653--8551NONE
TGGATGGAAAGATTCTCCCAAGAAT
NONE
OsAffx.4964.1.S1_at--687--6551Chr06:17107286..17107310 (25 bp)
GATTAAACTCAGGAGGCGCATTGGA
LOC_Os06g29780
OsAffx.4964.1.S1_at--592--1271Chr06:17107323..17107347 (25 bp)
AGATACTTCAAGTTGGTGCTCATTA
LOC_Os06g29780
OsAffx.4964.1.S1_at--168--6631Chr06:17107334..17107358 (25 bp)
GTTGGTGCTCATTATTGCAGGACAA
LOC_Os06g29780
OsAffx.4964.1.S1_at--311--9051Chr06:17107349..17107373 (25 bp)
TGCAGGACAACTTATCGCTTTGATA
LOC_Os06g29780
OsAffx.4964.1.S1_at--986--6611Chr06:17107376..17107400 (25 bp)
GTTGGAATCAGAACAGTTATATGCT
LOC_Os06g29780
OsAffx.4964.1.S1_at--865--9551Chr06:17107402..17107426 (25 bp)
TCTTTTACTTGTTTGTTGCTACCTT
LOC_Os06g29780
OsAffx.4964.1.S1_at--617--10771Chr06:17107410..17107434 (25 bp)
TTGTTTGTTGCTACCTTACCTTCCA
LOC_Os06g29780
Target Sequence 
GGCCCAAACTAAGTTGACATCGAGTATGTTTCGGAGTCCAGGACCAGTTTACACTAAAATGGTCGCTCAGGTCGCATACG
TGCTCGTATTGGGGCGTTCTTTATATGGATGGAAAGATTCTCCCAAGAATACAAGGATTAAACTCAGGAGGCGCATTGGA
AAAACAAGTATTAGATACTTCAAGTTGGTGCTCATTATTGCAGGACAACTTATCGCTTTGATAATGTTGGAATCAGAACA
GTTATATGCTTTCTTTTACTTGTTTGTTGCTACCTTACCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis