Browse Element(s) Details


OsAffx.5031.5.S1_x_at

Description tigr:9634.m01672
TID=OsAffx.5031.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16590OsAffx.27671.1.S1_at11/116+9530135..9530413hypothetical protein
LOC_Os06g16600OsAffx.30795.3.S1_at11/116+9542522..9543930expressed protein
LOC_Os06g16600OsAffx.30795.1.S1_x_at5/116+9542522..9543930expressed protein
LOC_Os06g16610OsAffx.15461.1.S1_at11/116+9549450..9549710hypothetical protein
LOC_Os06g16620OsAffx.5031.5.S1_x_at11/116+9551316..9551657hypothetical protein
LOC_Os06g16630NANA6+9553821..9554620hypothetical protein
LOC_Os06g16640Os.14411.1.S1_at11/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16640Os.9827.1.S1_at1/116+9563129..9565963Carboxyl-terminal peptidase, putative, expressed
LOC_Os06g16650OsAffx.15462.1.S1_at11/116+9572223..9572887hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5031.5.S1_x_at--456--4011Chr06:9551346..9551370 (25 bp)
CGTCGTATCTTGTGTCGGCTTCCGC
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--297--9391Chr06:9551348..9551372 (25 bp)
TCGTATCTTGTGTCGGCTTCCGCCG
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--1161--9293Chr10:15081428..15081452 (25 bp)
TCCGCCGCTGCGATGTCGTTCCAGA
NONE
OsAffx.5031.5.S1_x_at--123--10695Chr10:15712067..15712092 (25 bp)
TTCCAGAGCTGGTCCTGGTGTAGTC
NONE
OsAffx.5031.5.S1_x_at--336--3896Chr10:15712083..15712106 (24 bp)
CTGGTGTAGTCCATCTGCAGCTGGC
NONE
OsAffx.5031.5.S1_x_at--31--4391Chr06:9551443..9551467 (25 bp)
GCCAGCTGGTCGACGTCCTCTTCGT
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--1129--1611Chr06:9551446..9551470 (25 bp)
AGCTGGTCGACGTCCTCTTCGTCGC
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--95--8612Chr06:9551509..9551533 (25 bp)
TGGTCGACGGCCTCTGCGGGCTGCT
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--297--4472Chr06:9551518..9551542 (25 bp)
GCCTCTGCGGGCTGCTGCTTTCTTG
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--883--8333Chr06:9551585..9551609 (25 bp)
GGCTGTCGTCGTCGTGGGCCAACTC
LOC_Os06g16620
OsAffx.5031.5.S1_x_at--550--7552Chr06:9551600..9551624 (25 bp)
GGGCCAACTCGAACAGCAGGGCCAA
LOC_Os06g16620
Target Sequence 
CGTCGTATCTTGTGTCGGCTTCCGCCGCTGCGATGTCGTTCCAGAGCTGGTCCTGGTGTAGTCCATCTGCAGCTGGCTCG
CCGGCGTGGTGGCCGCCGCCAGCTGGTCGACGTCCTCTTCGTCGCCGCTGCAGCAGCTCGCCGGCGTGGTGGCCGCCACC
AGCTGGTCGACGGCCTCTGCGGGCTGCTGCTTTCTTGCAGCGCCGCCCTCGTCATCGTCGTGGTCGTCGTCGGCGTGGTG
GCTGTCGTCGTCGTGGGCCAACTCGAACAGCAGGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5031.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis