Browse Element(s) Details


OsAffx.5112.1.S1_s_at

Description tigr:9634.m04390
TID=OsAffx.5112.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA pseudouridine synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4525011/11tRNA pseudouridine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45180NANA6+27315963..27316607Pollen allergen family protein, expressed
LOC_Os06g45190NANA6+27322841..27323414Pollen allergen family protein, expressed
LOC_Os06g45200OsAffx.28113.1.S1_at11/116+27325494..27327706Pollen allergen family protein
LOC_Os06g45200OsAffx.28113.1.S1_x_at10/116+27325494..27327706Pollen allergen family protein
LOC_Os06g45200Os.50182.1.S1_at3/116+27325494..27327706Pollen allergen family protein
LOC_Os06g45200Os.24196.1.A1_x_at3/116+27325494..27327706Pollen allergen family protein
LOC_Os06g45200Os.25409.1.S1_x_at1/116+27325494..27327706Pollen allergen family protein
LOC_Os06g45210OsAffx.28114.1.S1_x_at10/116+27328134..27329359Pollen allergen family protein, expressed
LOC_Os06g45220OsAffx.28115.1.S1_at11/116+27330981..27331851hypothetical protein
LOC_Os06g45230NANA6+27332392..27333070Pollen allergen family protein, expressed
LOC_Os06g45240OsAffx.5111.1.S1_x_at7/116+27334850..27338390Leucine Rich Repeat family protein, expressed
LOC_Os06g45240OsAffx.5111.1.S1_at7/116+27334850..27338390Leucine Rich Repeat family protein, expressed
LOC_Os06g45250OsAffx.5112.1.S1_s_at11/116+27340886..27344792tRNA pseudouridine synthase family protein, expressed
LOC_Os06g45260NANA6+27350995..27354219transposon protein, putative, unclassified
LOC_Os06g45270NANA6+27354859..27361014transposon protein, putative, unclassified
LOC_Os06g45280Os.4929.1.S1_at11/116+27362819..27368187Protein kinase APK1B, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016439molecular_functiontRNA-pseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5112.1.S1_s_at--812--6851Chr06:27342189..27342213 (25 bp)
GTTTGCACGTGATACACAAGCTTCA
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--834--6611Chr06:27341936..27341958 (23 bp)
GTTGGTCCACCTACAGAGTGTTTCA
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--495--1111Chr06:27341920..27341944 (25 bp)
AGTGTTTCATGTTCCATTCTCGAGC
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--752--91Chr06:27341905..27341929 (25 bp)
ATTCTCGAGCTGCAGTGGCCAAACT
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--669--8451Chr06:27341890..27341914 (25 bp)
TGGCCAAACTACACACTGCTGATGA
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--400--5371Chr06:27341440..27341464 (25 bp)
GAAGAAGGCACCACCAGGGCCATAT
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--544--8911Chr06:27341411..27341435 (25 bp)
TGAGCTAGTCGCAAACAGGTTTCTG
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--697--1291Chr06:27341236..27341260 (25 bp)
AGATGCTTTGCTGAACCTGATGGAA
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--726--3431Chr06:27341174..27341198 (25 bp)
CAGATGGGCTCTGTCTTGTTGATGT
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--668--9791Chr06:27340985..27341009 (25 bp)
TAAGCAGCACTCTCCTGTAGGAAAT
LOC_Os06g45250
OsAffx.5112.1.S1_s_at--542--9071Chr06:27340954..27340978 (25 bp)
TGCTTCCTAGTTTCCATGTATCCAT
LOC_Os06g45250
Target Sequence 
GTTTGCACGTGATACACAAGCTTCACGAAGTGTTGGTCCACCTACAGAGTGTTTCATGTTCCATTCTCGAGCTGCAGTGG
CCAAACTACACACTGCTGATGAGAATTGTGAAGAAGGCACCACCAGGGCCATATGCATTGAGCTAGTCGCAAACAGGTTT
CTGCGCAAGATGGTTAGGGTTCTTGTTGCGACTGCCATAAGGGAGGCAGCTGCTGGTGCTGAAGAAGATGCTTTGCTGAA
CCTGATGGAAGCCACTTGCAGGCGAGCTACTGCTCCCCCAGCGCCTCCAGATGGGCTCTGTCTTGTTGATGTTGGATACG
AGGATTTCAATAGACAAAGGTGTTTCATTGTTGATTAAACAGAACAGTCATATTCCTGTTGGAGCAGAACAAGATATACT
GATTCAACAATCGAAAATCTGAATTTTTGGATTCCCGAGATGAAACTTAGATCATTCTGGTTGAACAGTGAACCTATAAG
CAGCACTCTCCTGTAGGAAATCTGACCTGCTTCCTAGTTTCCATGTATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5112.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis