Browse Element(s) Details


OsAffx.5435.1.S1_at

Description tigr:9635.m02443
TID=OsAffx.5435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2549011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25470NANA7+14576642..14578288KE03 protein, putative, expressed
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein
LOC_Os07g25484NANA7+14598828..14599110hypothetical protein
LOC_Os07g25490OsAffx.5435.1.S1_at11/117+14600782..14603244hypothetical protein
LOC_Os07g25500OsAffx.16405.1.S1_at11/117+14604550..14606094pentatricopeptide, putative, expressed
LOC_Os07g25510OsAffx.28579.1.S1_at11/117+14607567..14608065hypothetical protein
LOC_Os07g25520NANA7+14608507..14608809hypothetical protein
LOC_Os07g25530OsAffx.16406.1.S1_at11/117+14612172..14612592hypothetical protein
LOC_Os07g25540OsAffx.5436.1.S1_at11/117+14617050..14618807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5435.1.S1_at--570--2491Chr07:14600919..14600943 (25 bp)
AACAGGTCCATTAGCGGAGGCGAGT
LOC_Os07g25490
OsAffx.5435.1.S1_at--70--9251Chr07:14600925..14600949 (25 bp)
TCCATTAGCGGAGGCGAGTCTGGTT
LOC_Os07g25490
OsAffx.5435.1.S1_at--970--7531Chr07:14602703..14602727 (25 bp)
GTGGCATTCTTGAGCTCATGGAGCA
LOC_Os07g25490
OsAffx.5435.1.S1_at--1109--6671Chr07:14602758..14602782 (25 bp)
GTTGCGGCGACAAAGCTCAAGCACA
LOC_Os07g25490
OsAffx.5435.1.S1_at--893--10531Chr07:14602850..14602874 (25 bp)
TTCAGGAGCTCTATCTTCTCCACGA
LOC_Os07g25490
OsAffx.5435.1.S1_at--481--3051Chr07:14602875..14602899 (25 bp)
AATCGAGCTTGCCAGTGAGCTAGAG
LOC_Os07g25490
OsAffx.5435.1.S1_at--1015--9231Chr07:14603012..14603036 (25 bp)
TCCTTGCCGGCGACTGCGTGGAAAG
LOC_Os07g25490
OsAffx.5435.1.S1_at--638--3931Chr07:14603019..14603043 (25 bp)
CGGCGACTGCGTGGAAAGGCTTCCA
LOC_Os07g25490
OsAffx.5435.1.S1_at--995--8511Chr07:14603030..14603054 (25 bp)
TGGAAAGGCTTCCACCGATGACTGC
LOC_Os07g25490
OsAffx.5435.1.S1_at--781--4212Chr10:12454593..12454812 (25 bp)
CCGCCGTCAATGGTCACGAGGGAGA
NONE
OsAffx.5435.1.S1_at--813--5971Chr07:14603165..14603189 (25 bp)
GAGAAACACAACAGGGCGAGGAGAA
LOC_Os07g25490
Target Sequence 
AACAGGTCCATTAGCGGAGGCGAGTCTGGTTGCGGCTTGGCAGCAGGAGAGAAGCGGCGGTGGCATTCTTGAGCTCATGG
AGCAGGAGATCGGTGGCGGTGGAGCAGGGGACTTGTTGCGGCGACAAAGCTCAAGCACATCCCTAGCCTTCCCTTCTGTG
CGAACCGCCGGCGAGCCCAAGCTCAAGGTCCGCCTCTCCTGCCGCCTTCAGGAGCTCTATCTTCTCCACGAAATCGAGCT
TGCCAGTGAGCTAGAGCTGCTTGGGGATGTAGAGTTTGGCGGAGGTGACGGGGCTTGGGGACGCGTGTGGCTCCGGCGAG
ATCCGCCTCTTTTGCGCGGGGCAGCAAGCTCCACCGCCATCGCTGCTCTCCTTGCCGGCGACTGCGTGGAAAGGCTTCCA
CCGATGACTGCCTCCGCAACCCTAGCAGCGCCGCAGCCCTCGCAGCCGCTCCACATAGCCACCGCTGCCGTAGCTGCCAC
CCTCGCAGCAGCTCCATGCCGCCGTCAATGGTCACGAGGGAGAGAAACACAACAGGGCGAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis