Browse Element(s) Details


OsAffx.5596.1.S1_at

Description tigr:9635.m04190
TID=OsAffx.5596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4185011/11C1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein
LOC_Os07g41870NANA7+25083044..25086349retrotransposon protein, putative, unclassified
LOC_Os07g41880NANA7+25086965..25093120retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5596.1.S1_at--34--1711Chr07:25062197..25062221 (25 bp)
ACCAATAGTCACAACAAATGTTGGG
LOC_Os07g41850
OsAffx.5596.1.S1_at--31--7611Chr07:25062175..25062199 (25 bp)
GGGAAGAATGTACTTTCGCAGTTAA
LOC_Os07g41850
OsAffx.5596.1.S1_at--858--7351Chr07:25062167..25062191 (25 bp)
TGTACTTTCGCAGTTAAAAGGAACA
LOC_Os07g41850
OsAffx.5596.1.S1_at--442--2191Chr07:25062145..25062169 (25 bp)
ACAACGGTAATATTAGATGCAGGAA
LOC_Os07g41850
OsAffx.5596.1.S1_at--321--7711Chr07:25062101..25062125 (25 bp)
GGGTGGAGTGGGAAATTCACATATA
LOC_Os07g41850
OsAffx.5596.1.S1_at--126--7611Chr07:25062066..25062090 (25 bp)
GGGCAACACTAAACAAGGAGTCAAC
LOC_Os07g41850
OsAffx.5596.1.S1_at--442--6451Chr07:25062030..25062054 (25 bp)
GATCAACCAAGATAGGAGAATCATA
LOC_Os07g41850
OsAffx.5596.1.S1_at--972--8991Chr07:25061675..25061699 (25 bp)
TGAAGATACTATGCCTGTTGTGAGC
LOC_Os07g41850
OsAffx.5596.1.S1_at--898--9891Chr07:25061669..25061693 (25 bp)
TACTATGCCTGTTGTGAGCTTCTTT
LOC_Os07g41850
OsAffx.5596.1.S1_at--901--9171Chr07:25061664..25061688 (25 bp)
TGCCTGTTGTGAGCTTCTTTGCCAA
LOC_Os07g41850
OsAffx.5596.1.S1_at--608--4891Chr07:25061652..25061676 (25 bp)
GCTTCTTTGCCAAAATGTCCGGCAT
LOC_Os07g41850
Target Sequence 
ACCAATAGTCACAACAAATGTTGGGAAGAATGTACTTTCGCAGTTAAAAGGAACAACGGTAATATTAGATGCAGGAATGC
TTGGAGTAAAGATGTTGGGTGGAGTGGGAAATTCACATATATTAGAAACTGGGGCAACACTAAACAAGGAGTCAACAACA
GAAGAAAGATCAACCAAGATAGGAGAATCATACATCTATGAAACAAAGGTGGAGAATACCAATGAAGAGATGGTGGACGA
TGATGAGGGGGAAGAAGAGCCGGAGGAGGGGGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAGCCGGAGGAGGGGGGCGAAGAAGAAGAAGAACCGGAGGAGGGGGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAGCCGGAAGAGGGGGCCGAAGAAGAAGAAGACGACGAAGAAGAAGACGAAGAAGAAGAAGAGGAGGAGGA
GGATATTGAAGAAGACGAAAATGAAGAGGAGGAGGAAGAGGTTGAAGATACTATGCCTGTTGTGAGCTTCTTTGCCAAAA
TGTCCGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis