Browse Element(s) Details


OsAffx.5682.1.S1_at

Description tigr:9636.m00128
TID=OsAffx.5682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0228011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02250Os.8696.1.S1_x_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed
LOC_Os08g02250Os.8696.1.S1_at11/118+788844..791243IQ calmodulin-binding motif family protein, expressed
LOC_Os08g02260NANA8+791835..792398hypothetical protein
LOC_Os08g02270OsAffx.5681.1.S1_at11/118+813377..814284hypothetical protein
LOC_Os08g02280OsAffx.5682.1.S1_at11/118+815510..816064hypothetical protein
LOC_Os08g02290OsAffx.28986.1.S1_at11/118+818944..820387hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5682.1.S1_at--571--2551Chr08:815559..815583 (25 bp)
AACTGCTCAAGGATGCTCGGGACGT
LOC_Os08g02280
OsAffx.5682.1.S1_at--519--4951Chr08:815601..815625 (25 bp)
GCATAGTTAACGTGCTTGCCGTCCA
LOC_Os08g02280
OsAffx.5682.1.S1_at--1109--691Chr08:815646..815670 (25 bp)
ATGAGGTCACCGTCGATAGCACTAG
LOC_Os08g02280
OsAffx.5682.1.S1_at--977--9991Chr08:815668..815692 (25 bp)
TAGCGACGGCGATGTTTCTGCACCG
LOC_Os08g02280
OsAffx.5682.1.S1_at--444--10571Chr08:815683..815707 (25 bp)
TTCTGCACCGAATGAGGACCACTTC
LOC_Os08g02280
OsAffx.5682.1.S1_at--116--1051Chr08:815757..815781 (25 bp)
AGGTGACTCTCCAGATGCTAAGCGA
LOC_Os08g02280
OsAffx.5682.1.S1_at--93--2751Chr08:815816..815840 (25 bp)
AAGAAGCTCATGTTCCGCGTCAGAG
LOC_Os08g02280
OsAffx.5682.1.S1_at--875--7311Chr08:815855..815879 (25 bp)
GTGCTCAGGTGGTCCAAGGCAGTAA
LOC_Os08g02280
OsAffx.5682.1.S1_at--391--1251Chr08:815910..815934 (25 bp)
AGTTGGCTCGTGTAGGCTCTTTGTT
LOC_Os08g02280
OsAffx.5682.1.S1_at--927--7951Chr08:815973..815997 (25 bp)
GGATCAAGTTTGCAAGCCATCTCAT
LOC_Os08g02280
OsAffx.5682.1.S1_at--1105--9331Chr08:815997..816021 (25 bp)
TCGCGCTCGGCTCGTTGATCATGAA
LOC_Os08g02280
Target Sequence 
AACTGCTCAAGGATGCTCGGGACGTCCACCAACGACATGGCTGCATAGTTAACGTGCTTGCCGTCCACCCCATCACAGGC
GAGCGCCATGAGGTCACCGTCGATAGCACTAGCGACGGCGATGTTTCTGCACCGAATGAGGACCACTTCACTGCCCGTGT
CGTGAGGAGGTACCTCCGTCTCAAGGGGCGGCTCGGTGAGGTGACTCTCCAGATGCTAAGCGAGGAGTTTGGTGGTGCCA
TGAGGCTCGCCGATGTCAAGAAGCTCATGTTCCGCGTCAGAGCAGTCAGGCTCGCTGTGCTCAGGTGGTCCAAGGCAGTA
AGGATGGCCACCTCGGCGGAGCTGCTGCCGGAGTTGGCTCGTGTAGGCTCTTTGTTCCGCGCCCCAGTAGCCATGGTGGC
ACCGCTTGAGCAAGGGATCAAGTTTGCAAGCCATCTCATCGCGCTCGGCTCGTTGATCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis