Browse Element(s) Details


OsAffx.5802.1.S1_at

Description tigr:9636.m01319
TID=OsAffx.5802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13350Os.48839.1.S1_at11/118+7933379..7938142ubiquitin carboxyl-terminal hydrolase family protein, putative, expressed
LOC_Os08g13360Os.27001.2.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360OsAffx.16975.1.S1_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13360Os.27001.3.A1_a_at11/118+7940273..7945595F-box protein ZEITLUPE/FKF/LKP/ADAGIO family, putative, expressed
LOC_Os08g13369NANA8+7947133..7949172NA
LOC_Os08g13380OsAffx.5802.1.S1_at11/118+7949938..7950678hypothetical protein
LOC_Os08g13390Os.55149.1.S1_at11/118+7957286..7962203expressed protein
LOC_Os08g13400NANA8+7966587..7966832hypothetical protein
LOC_Os08g13410NANA8+7970000..7972730retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5802.1.S1_at--255--7771Chr08:7950114..7950138 (25 bp)
GGTGACACCGTCAATGTGCCCTCGT
LOC_Os08g13380
OsAffx.5802.1.S1_at--545--9091Chr08:7950265..7950289 (25 bp)
TGCTCACGCTCGGTGAAGATGGGCT
LOC_Os08g13380
OsAffx.5802.1.S1_at--1056--4771Chr08:7950287..7950311 (25 bp)
GCTGCGTGCTCAAGGACGTCGACGA
LOC_Os08g13380
OsAffx.5802.1.S1_at--704--4771Chr08:7950334..7950358 (25 bp)
GCTGCTCCTCACATGATGATGGCGA
LOC_Os08g13380
OsAffx.5802.1.S1_at--421--10131Chr08:7950370..7950394 (25 bp)
TATGCGGCCGCATGTAGGAGAACAA
LOC_Os08g13380
OsAffx.5802.1.S1_at--906--8691Chr08:7950410..7950434 (25 bp)
TGTGCGCCCAACCACGGATGAGGAT
LOC_Os08g13380
OsAffx.5802.1.S1_at--914--191Chr08:7950494..7950518 (25 bp)
ATTTCTCCGGTGTCGTGGCGTTCGC
LOC_Os08g13380
OsAffx.5802.1.S1_at--743--4811Chr08:7950543..7950567 (25 bp)
GCTCTCGCGCTTGGCAAGGATAAGT
LOC_Os08g13380
OsAffx.5802.1.S1_at--1037--991Chr08:7950559..7950583 (25 bp)
AGGATAAGTCGTGCATGCTTCCCAT
LOC_Os08g13380
OsAffx.5802.1.S1_at--194--4331Chr08:7950580..7950604 (25 bp)
CCATCCATGCGCTTGGGAACAGCAA
LOC_Os08g13380
OsAffx.5802.1.S1_at--208--2231Chr08:7950607..7950631 (25 bp)
ACAAGGTCCGTCGTGGCATCTATGG
LOC_Os08g13380
Target Sequence 
GGTGACACCGTCAATGTGCCCTCGTCCTCCGCAGCACCGCCCTCGCTGTGCCGGCCGCATGCTGCTGCGTGTTCGGCGGC
GTTGCCCTCGTCGCGACGGTCGCATGCCCAACATTGCCGCCACCACGCCCACTCCTCTACGGAGGAAGGAGTGCTCACGC
TCGGTGAAGATGGGCTGCGTGCTCAAGGACGTCGACGATGACGGCAAGGGGTGCCACTCCGCTGCTCCTCACATGATGAT
GGCGAGGGGCTCCCGCTATGCGGCCGCATGTAGGAGAACAATGAAGATGAGGTGCTTGTGCGCCCAACCACGGATGAGGA
TGACGAGGGGATGTGGGTGCTTCACCAGCGCCGCCCTTCTCCTTGCTCACGGCGCAATCCATTTCTCCGGTGTCGTGGCG
TTCGCGGCCGCTGCTCCTCCCTCGCTCCCGCTCTCGCGCTTGGCAAGGATAAGTCGTGCATGCTTCCCATCCATGCGCTT
GGGAACAGCAACGACAAGGTCCGTCGTGGCATCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis