Browse Element(s) Details


OsAffx.5853.1.S1_at

Description tigr:9636.m01744
TID=OsAffx.5853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g173309/11hypothetical protein
LOC_Os08g067901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed
LOC_Os08g17330OsAffx.5853.1.S1_at9/118+10596806..10598596hypothetical protein
LOC_Os08g17330OsAffx.29554.1.S1_at1/118+10596806..10598596hypothetical protein
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5853.1.S1_at--351--3792Chr08:10596863..10597129 (25 bp)
CTCGAACTTTCTGGTCGGAGCGGAT
LOC_Os08g17330
OsAffx.5853.1.S1_at--1015--3991Chr08:10597179..10597203 (25 bp)
CGTGTTGGTGCTGGCGGGATTCGAC
LOC_Os08g17330
OsAffx.5853.1.S1_at--781--1811Chr08:10597202..10597226 (25 bp)
ACGCGGGCCGGCTCCTGTCAACGGA
LOC_Os08g17330
OsAffx.5853.1.S1_at--722--3891Chr08:10597422..10597446 (25 bp)
CTGTGGATGTGTGTATGCATGCAGC
LOC_Os08g17330
OsAffx.5853.1.S1_at--777--791Chr08:10597457..10597481 (25 bp)
ATGGGCATATTGTGCGTTGGTCCAA
LOC_Os08g17330
OsAffx.5853.1.S1_at--760--4631Chr08:10597470..10597494 (25 bp)
GCGTTGGTCCAAGGCATCGAGCAGA
LOC_Os08g17330
OsAffx.5853.1.S1_at--716--1511Chr08:10597489..10597513 (25 bp)
AGCAGAGGTTGCATCGGAATCGGTC
LOC_Os08g17330
OsAffx.5853.1.S1_at--650--11NONE
ATCGGAATCGGTCGTAGGAACGAAT
NONE
OsAffx.5853.1.S1_at--421--6911Chr08:10598209..10598232 (24 bp)
GTAGGAACGAATTCAATTTCACTTG
LOC_Os08g17330
OsAffx.5853.1.S1_at--1044--3271Chr08:10598302..10598326 (25 bp)
CAAAGATGGCGGAGTCTCTTGTTAC
LOC_Os08g17330
OsAffx.5853.1.S1_at--433--6431Chr08:10600658..10600682 (25 bp)
GATCTTGCCGGATGTGGATTCGAAG
NONE
Target Sequence 
CTCGAACTTTCTGGTCGGAGCGGATTTGTTGGCGACGAAGTCCGAGCGGCAGGAACACGGCTTGGTGTGGTCGTCGTGTT
GGTGCTGGCGGGATTCGACGCGGGCCGGCTCCTGTCAACGGAGGCGGCGACGGCTCGGTTCATGGTGGCTGTGGATGTGT
GTATGCATGCAGCAGAGGGGTCCATGGGCATATTGTGCGTTGGTCCAAGGCATCGAGCAGAGGTTGCATCGGAATCGGTC
GTAGGAACGAATTCAATTTCACTTGGCAAGACGATTGTGGTGATAGGAGAGAAGGTGGAGCACTGTTGCAGGTGGAGTCA
AGAGGAAGAAGTTACAAAGATGGCGGAGTCTCTTGTTACGGAGAGACATAGCGCTGTCTTTGATCTTGCCGGATGTGGAT
TCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis