Browse Element(s) Details


OsAffx.5854.1.S1_at

Description tigr:9636.m01746
TID=OsAffx.5854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1735011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed
LOC_Os08g17330OsAffx.5853.1.S1_at9/118+10596806..10598596hypothetical protein
LOC_Os08g17330OsAffx.29554.1.S1_at1/118+10596806..10598596hypothetical protein
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified
LOC_Os08g17390OsAffx.17044.1.S1_at11/118+10623966..10628024expressed protein
LOC_Os08g17390Os.11404.1.S1_s_at11/118+10623966..10628024expressed protein
LOC_Os08g17400Os.27818.1.S1_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400Os.27818.1.S2_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5854.1.S1_at--1152--1911Chr08:10606943..10606965 (23 bp)
ACGGTGGTCGCCAAAGTTGATTGGT
LOC_Os08g17350
OsAffx.5854.1.S1_at--379--6651Chr08:10606928..10606952 (25 bp)
GTTGATTGGTTTGTCCCACGAAGCC
LOC_Os08g17350
OsAffx.5854.1.S1_at--74--8591Chr08:10606922..10606946 (25 bp)
TGGTTTGTCCCACGAAGCCCGGAGT
LOC_Os08g17350
OsAffx.5854.1.S1_at--196--10652Chr10:11542386..11542552 (25 bp)
TTCCTCGCCGGAAACATGGTTGACA
NONE
OsAffx.5854.1.S1_at--441--6651Chr08:10606880..10606904 (25 bp)
GTTGACACCGATGTGTCTGAGCCCT
LOC_Os08g17350
OsAffx.5854.1.S1_at--1083--8911Chr08:10606863..10606887 (25 bp)
TGAGCCCTCTCTTCAGAACTTAGTT
LOC_Os08g17350
OsAffx.5854.1.S1_at--589--10431Chr08:10606844..10606868 (25 bp)
TTAGTTCCTCTCCAGGCCGACCATG
LOC_Os08g17350
OsAffx.5854.1.S1_at--538--891Chr08:10606831..10606855 (25 bp)
AGGCCGACCATGACTCCTTGGTGCC
LOC_Os08g17350
OsAffx.5854.1.S1_at--572--3631Chr08:10606800..10606824 (25 bp)
CTTCCATTGGTCGTTTACTTCCAGA
LOC_Os08g17350
OsAffx.5854.1.S1_at--752--10851Chr08:10606794..10606818 (25 bp)
TTGGTCGTTTACTTCCAGATCTGGT
LOC_Os08g17350
OsAffx.5854.1.S1_at--132--6831Chr08:10606788..10606812 (25 bp)
GTTTACTTCCAGATCTGGTCGTGCT
LOC_Os08g17350
Target Sequence 
ACGGTGGTCGCCAAAGTTGATTGGTTTGTCCCACGAAGCCCGGAGTTCCTCGCCGGAAACATGGTTGACACCGATGTGTC
TGAGCCCTCTCTTCAGAACTTAGTTCCTCTCCAGGCCGACCATGACTCCTTGGTGCCTCCCCCCTTCCATTGGTCGTTTA
CTTCCAGATCTGGTCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis