Browse Element(s) Details


Os.27818.1.S2_at

Description gb:CB618638
DB_XREF= gi:29613625
DB_XREF=OSIIEa02K21.r
CLONE=OSIIEa02K21
TID=Os.27818.1
CNT=11
FEA=FLmRNA
TIER=ConsEnd
STK=3
UG=Os.27818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042N14, full insert sequence
FL= gb:AK073491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1740011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified
LOC_Os08g17390OsAffx.17044.1.S1_at11/118+10623966..10628024expressed protein
LOC_Os08g17390Os.11404.1.S1_s_at11/118+10623966..10628024expressed protein
LOC_Os08g17400Os.27818.1.S1_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400Os.27818.1.S2_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17410Os.6810.1.S1_at10/118+10649176..10652201leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27818.1.S2_at--1046--791Chr08:10627874..10627898 (25 bp)
ATGGGCCTGTTCCTATGATCATTCC
LOC_Os08g17400
Os.27818.1.S2_at--574--6431Chr08:10627858..10627882 (25 bp)
GATCATTCCAGCAGAGACAACATCT
LOC_Os08g17400
Os.27818.1.S2_at--896--2471Chr08:10627840..10627864 (25 bp)
AACATCTGAGCAGCCCAGCACAATG
LOC_Os08g17400
Os.27818.1.S2_at--1021--5531Chr08:10627798..10627822 (25 bp)
GAAACAGCCGATCAGTCTGCTGAAG
LOC_Os08g17400
Os.27818.1.S2_at--663--7591Chr08:10627750..10627774 (25 bp)
GGGCAAGACTTCAGAAATCGGTGGT
LOC_Os08g17400
Os.27818.1.S2_at--712--7511Chr08:10627716..10627740 (25 bp)
GTGGAGTCTGCGCAAACCCTTATCA
LOC_Os08g17400
Os.27818.1.S2_at--855--4931Chr08:10627691..10627715 (25 bp)
GCATTAAAACTAATCCCGATGACAT
LOC_Os08g17400
Os.27818.1.S2_at--500--6311Chr08:10627674..10627698 (25 bp)
GATGACATGAAGAATACCCTCTTGA
LOC_Os08g17400
Os.27818.1.S2_at--139--1751Chr08:10627658..10627682 (25 bp)
CCCTCTTGAAAGATACTTCCGCGGT
LOC_Os08g17400
Os.27818.1.S2_at--836--9291Chr08:10627641..10627665 (25 bp)
TCCGCGGTAGTTCCTGTCCAAAATA
LOC_Os08g17400
Os.27818.1.S2_at--732--10031Chr08:10627536..10627560 (25 bp)
TAGATTCTGTACATGAGTTGAGGGC
LOC_Os08g17400
Target Sequence 
ATGGGCCTGTTCCTATGATCATTCCAGCAGAGACAACATCTGAGCAGCCCAGCACAATGACCTCAACATCAGAACAGAAA
CAGCCGATCAGTCTGCTGAAGGATGGCGGCGATGAGCCCATGAAGGGCAAGACTTCAGAAATCGGTGGTGAGAAGGCAGT
GGAGTCTGCGCAAACCCTTATCAGCATTAAAACTAATCCCGATGACATGAAGAATACCCTCTTGAAAGATACTTCCGCGG
TAGTTCCTGTCCAAAATAATTGATCCTGTGAGGTTAGGGTTGATTCGATTAATGTATTAGTTTGTGGTATTTATTGGTTC
GGGGAGCTATTGTTGTGTTAGATTCTGTACATGAGTTGAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27818.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis