Browse Element(s) Details


Os.11404.1.S1_s_at

Description gb:AK105984.1
DB_XREF= gi:32991193
TID=Os.11404.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full insert sequence.
FL= gb:AK105984.1 gb:AK068157.1 gb:AK104325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1739011/11expressed protein
LOC_Os12g023901/11Vacuolar sorting receptor 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified
LOC_Os08g17390OsAffx.17044.1.S1_at11/118+10623966..10628024expressed protein
LOC_Os08g17390Os.11404.1.S1_s_at11/118+10623966..10628024expressed protein
LOC_Os08g17400Os.27818.1.S1_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400Os.27818.1.S2_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17410Os.6810.1.S1_at10/118+10649176..10652201leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0006896biological_processGolgi to vacuole transport
GO:0005794cellular_componentGolgi apparatus
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
GO:0009940molecular_functionamino-terminal vacuolar sorting propeptide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11404.1.S1_s_at--536--2611Chr08:10626730..10626857 (25 bp)
AACGCCAGGGACAAGCCATGCGTGG
LOC_Os08g17390
Os.11404.1.S1_s_at--530--3471Chr08:10626735..10626862 (25 bp)
CAGGGACAAGCCATGCGTGGCTCTC
LOC_Os08g17390
Os.11404.1.S1_s_at--50--7551Chr08:10626854..10626878 (25 bp)
GTGGCTCTCTTCTCATCCAAGGAGA
LOC_Os08g17390
Os.11404.1.S1_s_at--295--1471Chr08:10626876..10626900 (25 bp)
AGAAGGCGAGGCTGTTCCTGCCGTA
LOC_Os08g17390
Os.11404.1.S1_s_at--667--6692Chr08:10627172..10627196 (25 bp)
GTTCCACATACAACCGCATGAAATG
LOC_Os08g17390
Os.11404.1.S1_s_at--672--4991Chr08:10627187..10627211 (25 bp)
GCATGAAATGCCCAAACTCACCTTG
LOC_Os08g17390
Os.11404.1.S1_s_at--16--591Chr08:10627194..10627218 (25 bp)
ATGCCCAAACTCACCTTGTCTACTG
LOC_Os08g17390
Os.11404.1.S1_s_at--17--10831Chr08:10627209..10627233 (25 bp)
TTGTCTACTGCTCACCGAGCAGACA
LOC_Os08g17390
Os.11404.1.S1_s_at--726--4831Chr08:10627218..10627242 (25 bp)
GCTCACCGAGCAGACAAGCGATGCA
LOC_Os08g17390
Os.11404.1.S1_s_at--980--2671Chr08:10627233..10627257 (25 bp)
AAGCGATGCAGCCTGTGTTACTCTG
LOC_Os08g17390
Os.11404.1.S1_s_at--1142--7411Chr08:10627247..10627271 (25 bp)
GTGTTACTCTGTTTATAGAATGGAA
LOC_Os08g17390
Target Sequence 
AACGCCAGGGACAAGCCATGCGTGGCTCTCTTCTCATCCAAGGAGAAGGCGAGGCTGTTCCTGCCGTACTTGGAGGAGAA
GAAGGGCTGCACCGTCGTCGCGTCGGAGACCGGGAAGCTGATCGACATCGACGTCGAGGCCGTCAAGAAGGCGGTGAAGG
AGTTCAAGGCCGCCCCAAGCGTTGCATTGGCTCAAACATGATGAAGACCATCATCTTCTTGTTGCACTGTACATAGATCT
GCACGGTTACAGTGAGCTCGCCTGAGCAAGTGAGCAGCAAAAGCTCCTTGCCTGGCTCTGATTCAATGTGTCTTGTAGTC
GTTCAGTTCAGCTACAAATGTTCCACATACAACCGCATGAAATGCCCAAACTCACCTTGTCTACTGCTCACCGAGCAGAC
AAGCGATGCAGCCTGTGTTACTCTGTTTATAGAATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11404.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis