Browse Element(s) Details


Os.27818.1.S1_at

Description gb:AK073491.1
DB_XREF= gi:32983514
TID=Os.27818.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042N14, full insert sequence.
FL= gb:AK073491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1740011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified
LOC_Os08g17390OsAffx.17044.1.S1_at11/118+10623966..10628024expressed protein
LOC_Os08g17390Os.11404.1.S1_s_at11/118+10623966..10628024expressed protein
LOC_Os08g17400Os.27818.1.S1_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400Os.27818.1.S2_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17410Os.6810.1.S1_at10/118+10649176..10652201leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27818.1.S1_at--1149--3431Chr08:10631744..10631768 (25 bp)
CAGTCCATTTCCTATAACACCTAAA
LOC_Os08g17400
Os.27818.1.S1_at--776--2471Chr08:10631729..10631753 (25 bp)
AACACCTAAAGCTGTAATGCCCCTG
LOC_Os08g17400
Os.27818.1.S1_at--588--10531Chr08:10631640..10631664 (25 bp)
TTCAGTCAAGACCACACAATCATGT
LOC_Os08g17400
Os.27818.1.S1_at--974--2731Chr08:10631497..10631521 (25 bp)
AAGAAGGTCGAGCATTGTCCTGATG
LOC_Os08g17400
Os.27818.1.S1_at--904--8411Chr08:10631473..10631497 (25 bp)
GGCCGCGTGGTGGAAATCATTTACA
LOC_Os08g17400
Os.27818.1.S1_at--179--671Chr08:10631433..10631457 (25 bp)
ATGAACCGCCACAAAAGACCAGATT
LOC_Os08g17400
Os.27818.1.S1_at--75--6031Chr08:10631399..10631423 (25 bp)
GAGAGTGGCTCATATTACTGCTTCC
LOC_Os08g17400
Os.27818.1.S1_at--844--9911Chr08:10631384..10631408 (25 bp)
TACTGCTTCCTCTGGAGATGATGAA
LOC_Os08g17400
Os.27818.1.S1_at--258--7311Chr08:10631295..10631319 (25 bp)
GTGCTGTCTCTGAAGCTTCTGAACA
LOC_Os08g17400
Os.27818.1.S1_at--1151--5491Chr08:10631275..10631299 (25 bp)
GAACAGCAGCTTTTTTGCTCAAGTG
LOC_Os08g17400
Os.27818.1.S1_at--342--1311Chr08:10631219..10631243 (25 bp)
AGATGATCATCCTAGCACAGAGCCT
LOC_Os08g17400
Target Sequence 
CAGTCCATTTCCTATAACACCTAAAGCTGTAATGCCCCTGCAGCGATCACCTTCANGAACTGAAGGGAGTGTTCGCANAT
CAGTGTTAGAGAAGTCANCCTCATTTCAGTCAAGACCACACAATCATGTGTCTGTAAACATGGTTGGTGATGGCTTCAAC
TGGAGGAAGTATGGTCAGAAGCAAGTGAAAAGTAGTGAAAATTCCAGGAGTTACTATAGATGTACCAACTCTAATTGCTT
GGCTAAAAAGAAGGTCGAGCATTGTCCTGATGGCCGCGTGGTGGAAATCATTTACAGAGGAACACATAATCATGAACCGC
CACAAAAGACCAGATTTGTGAAAGAGAGAGTGGCTCATATTACTGCTTCCTCTGGAGATGATGAAACCTTGNGACTTGTG
AACAATGAAATTATAGAATCCCCNTCACCGGGATGTAAATTAGAGCCGGGTGCTGTCTCTGAAGCTTCTGAACAGCAGCT
TTTTTGCTCAAGTGATTGTGAAGGTGATGCTGGTAACAAATCAGAAGATGATCATCCTAGCACAGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis